Difference between revisions of "Haynes Lab:Notebook/Engineering PC-TFs/2014/06/09"

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|style="background-color: #FFCC00"|<br>[[Image:Hayneslab3.gif|200px|center]][[Image:Asu logo 3.gif|200px|center]]<span style="font-size:22px;"><br></span>
 
|style="background-color: #FFCC00"|<br>[[Image:Hayneslab3.gif|200px|center]][[Image:Asu logo 3.gif|200px|center]]<span style="font-size:22px;"><br></span>
|style="background-color: #800000" align="center"|<html><img src="/images/9/94/Report.png" border="0" /></html> [[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>[[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]]<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>}}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]]<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>}}
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|style="background-color: #800000" align="center"|[[File:Report.png|frameless|link={{#sub:{{FULLPAGENAME}}|0|-11}}]][[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|[[File:Resultset_previous.png|frameless|link={{#lnpreventry:{{FULLPAGENAME}}}}]][[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]]&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;}}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]][[File:Resultset_next.png|frameless|link={{#lnnextentry:{{FULLPAGENAME}}}}]]}}
 
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| colspan="2"|
 
| colspan="2"|
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| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Volume
 
| bgcolor=#cfcfcf | Volume
| rowspan="7" | <u>Expected:</u><br>1. Unknown <br>
+
| rowspan="7" | <u>Expected:</u><br>1. Unknown <br><u>Observed:</u><br> 3k, 7k, 2k<br>
 
|-
 
|-
 
| DNA(CMV/MV9) || 5.0 μL
 
| DNA(CMV/MV9) || 5.0 μL
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| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Volume
 
| bgcolor=#cfcfcf | Volume
| rowspan="7" | <u>Expected:</u><br>1. 5200bp <br>
+
| rowspan="7" | <u>Expected:</u><br>1. 5200bp <br><u>Observed:</u><br> 5.2k, 2k<br>
 
|-
 
|-
 
| DNA(CMV/MV9) || 5.0 μL
 
| DNA(CMV/MV9) || 5.0 μL
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| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Volume
 
| bgcolor=#cfcfcf | Volume
| rowspan="7" | <u>Expected:</u><br>1. 5200bp <br>
+
| rowspan="7" | <u>Expected:</u><br>1. 5200bp <br><u>Observed:</u><br> 5.2k, 2k<br>
 
|-
 
|-
 
| DNA(CMV/MV9) || 5.0 μL
 
| DNA(CMV/MV9) || 5.0 μL
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| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Volume
 
| bgcolor=#cfcfcf | Volume
| rowspan="7" | <u>Expected:</u><br>1. 710bp, 4490bp <br>
+
| rowspan="7" | <u>Expected:</u><br>1. 710bp, 4490bp <br><u>Observed:</u><br> 4k, 2k, 700<br>
 
|-
 
|-
 
| DNA(CMV/MV9) || 5.0 μL
 
| DNA(CMV/MV9) || 5.0 μL
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| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Volume
 
| bgcolor=#cfcfcf | Volume
| rowspan="7" | <u>Expected:</u><br>1. BL01 = 2520bp, V0120-2520bp <br>
+
| rowspan="7" | <u>Expected:</u><br>1. BL01 = Insert (2520bp), V0120(3265bp) <br><u>Observed:</u><br> 3.1k, 2.6k<br>
 
|-
 
|-
 
| DNA(BL01A) || 5.0 μL
 
| DNA(BL01A) || 5.0 μL
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| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Volume
 
| bgcolor=#cfcfcf | Volume
| rowspan="7" | <u>Expected:</u><br>1. BL01 = 2520bp, V0120-2520bp <br>
+
| rowspan="7" | <u>Expected:</u><br>1. BL01 = 2520bp, 3265bp <br> <u>Observed:</u><br> 3.1k, 2.6k, 7k<br>
 
|-
 
|-
 
| DNA(BL01B) || 5.0 μL
 
| DNA(BL01B) || 5.0 μL
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| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Volume
 
| bgcolor=#cfcfcf | Volume
| rowspan="7" | <u>Expected:</u><br>1. [[User:Cameron Lee Gardner|Cameron Lee Gardner]] 18:00, 10 June 2014 (EDT) <br>
+
| rowspan="7" | <u>Expected:</u><br> 2520bp, 3265bp <u>Observed:</u><br> Faint: 3.1k, 2.6k, 7k<br>
 
|-
 
|-
 
| DNA(BL05) || 5.0 μL
 
| DNA(BL05) || 5.0 μL
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| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Volume
 
| bgcolor=#cfcfcf | Volume
| rowspan="7" | <u>Expected:</u><br>1. [[User:Cameron Lee Gardner|Cameron Lee Gardner]] <br>
+
| rowspan="7" | <u>Expected:</u><br> 1431bp, 3265bp <u>Observed:</u><br> 3.1k, 4.9k, 1.5k <br>
 
|-
 
|-
 
| DNA(BL09) || 5.0 μL
 
| DNA(BL09) || 5.0 μL
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| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Volume
 
| bgcolor=#cfcfcf | Volume
| rowspan="7" | <u>Expected:</u><br>1. BL01 = 7720bp <br>
+
| rowspan="7" | <u>Expected:</u><br>1. BL01 = 7720bp <br> <u>Observed:</u><br> 4k, 2k, 1.5k <br>
 
|-
 
|-
 
| DNA(CMV/MV9 & BL01) || 5.0 μL
 
| DNA(CMV/MV9 & BL01) || 5.0 μL
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| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Reagent  
 
| bgcolor=#cfcfcf | Volume
 
| bgcolor=#cfcfcf | Volume
| rowspan="7" | <u>Expected:</u><br>1. dependent on ligation direction <br>
+
| rowspan="7" | <u>Expected:</u><br>1. dependent on ligation direction <br><u>Observed:</u><br>4k, 2k, 1.5k<br>
 
|-
 
|-
 
| DNA(CMV/MV9 & BL01) || 5.0 μL
 
| DNA(CMV/MV9 & BL01) || 5.0 μL

Latest revision as of 23:02, 26 September 2017


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Summary

Digest All the Things


Well One: Ladder
Well Two

Reagent Volume Expected:
1. Unknown
Observed:
3k, 7k, 2k
DNA(CMV/MV9) 5.0 μL
10X buffer 1.5 μL
XbaI 0.0 μL
NruI 0.0 μL
dH2O 8.5 μL
Total 15 μL --> 37°C/ 30 min.


Well Three

Reagent Volume Expected:
1. 5200bp
Observed:
5.2k, 2k
DNA(CMV/MV9) 5.0 μL
10X buffer 1.5 μL
XbaI 1.0 μL
NruI 0.0 μL
dH2O 7.5 μL
Total 15 μL --> 37°C/ 30 min.

Well Four

Reagent Volume Expected:
1. 5200bp
Observed:
5.2k, 2k
DNA(CMV/MV9) 5.0 μL
10X buffer 1.5 μL
XbaI 0.0 μL
NruI 1.0 μL
dH2O 7.5 μL
Total 15 μL --> 37°C/ 30 min.


Well Five

Reagent Volume Expected:
1. 710bp, 4490bp
Observed:
4k, 2k, 700
DNA(CMV/MV9) 5.0 μL
10X buffer 1.5 μL
XbaI 1.0 μL
NruI 1.0 μL
dH2O 6.5 μL
Total 15 μL --> 37°C/ 30 min.


Well Six

Reagent Volume Expected:
1. BL01 = Insert (2520bp), V0120(3265bp)
Observed:
3.1k, 2.6k
DNA(BL01A) 5.0 μL
10X buffer 1.5 μL
XbaI 1.0 μL
SpeI 1.0 μL
dH2O 7.5 μL
Total 15 μL --> 37°C/ 30 min.


Well Seven

Reagent Volume Expected:
1. BL01 = 2520bp, 3265bp
Observed:
3.1k, 2.6k, 7k
DNA(BL01B) 5.0 μL
10X buffer 1.5 μL
XbaI 1.0 μL
SpeI 1.0 μL
dH2O 7.5 μL
Total 15 μL --> 37°C/ 30 min.


Well Eight

Reagent Volume Expected:
2520bp, 3265bp Observed:
Faint: 3.1k, 2.6k, 7k
DNA(BL05) 5.0 μL
10X buffer 1.5 μL
XbaI 1.0 μL
SpeI 1.0 μL
dH2O 7.5 μL
Total 15 μL --> 37°C/ 30 min.


Well Nine

Reagent Volume Expected:
1431bp, 3265bp Observed:
3.1k, 4.9k, 1.5k
DNA(BL09) 5.0 μL
10X buffer 1.5 μL
XbaI 1.0 μL
SpeI 1.0 μL
dH2O 7.5 μL
Total 15 μL --> 37°C/ 30 min.


Well 10

Reagent Volume Expected:
1. BL01 = 7720bp
Observed:
4k, 2k, 1.5k
DNA(CMV/MV9 & BL01) 5.0 μL
10X buffer 1.5 μL
XbaI 0.0 μL
NruI 1.0 μL
dH2O 7.5 μL
Total 15 μL --> 37°C/ 30 min.


Well 11

Reagent Volume Expected:
1. dependent on ligation direction
Observed:
4k, 2k, 1.5k
DNA(CMV/MV9 & BL01) 5.0 μL
10X buffer 1.5 μL
XbaI 1.0 μL
NruI 1.0 μL
dH2O 6.5 μL
Total 15 μL --> 37°C/ 30 min.



Gel Verification

Hover name
Ladder