Difference between revisions of "Gerber:Publications"

From OpenWetWare
Jump to: navigation, search
Line 3: Line 3:
 
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications.  You can add or remove lines as needed -->
 
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications.  You can add or remove lines as needed -->
 
<biblio>
 
<biblio>
#Paper24 Kanitz A and Gerber AP. ''Circuitry of mRNA regulation.'' Wiley Interdisciplinary Reviews: Systems Biology and Medicine 2009 /in press/
+
#Paper24 Kanitz A and Gerber AP. ''Circuitry of mRNA regulation.'' Wiley Interdisciplinary Reviews: Systems Biology and Medicine 2009 Sep 30. doi: 10.1002/wsbm.55 [http://www3.interscience.wiley.com/cgi-bin/fulltext/122598197/HTMLSTART Link]
 
#Paper23 pmid=19713935
 
#Paper23 pmid=19713935
 
#Paper22 pmid=19593367
 
#Paper22 pmid=19593367

Revision as of 01:14, 7 October 2009

Gerber Lab banner.PNG

Home         What We Do         Publications         Resources         People         Photos         Links         Contact

  1. Kanitz A and Gerber AP. Circuitry of mRNA regulation. Wiley Interdisciplinary Reviews: Systems Biology and Medicine 2009 Sep 30. doi: 10.1002/wsbm.55 Link [Paper24]
  2. Halbach A, Zhang H, Wengi A, Jablonska Z, Gruber IM, Halbeisen RE, Dehé PM, Kemmeren P, Holstege F, Géli V, Gerber AP, and Dichtl B. Cotranslational assembly of the yeast SET1C histone methyltransferase complex. EMBO J. 2009 Oct 7;28(19):2959-70. DOI:10.1038/emboj.2009.240 | PubMed ID:19713935 | HubMed [Paper23]
  3. San Paolo S, Vanacova S, Schenk L, Scherrer T, Blank D, Keller W, and Gerber AP. Distinct roles of non-canonical poly(A) polymerases in RNA metabolism. PLoS Genet. 2009 Jul;5(7):e1000555. DOI:10.1371/journal.pgen.1000555 | PubMed ID:19593367 | HubMed [Paper22]
  4. Halbeisen RE and Gerber AP. Stress-dependent coordination of transcriptome and translatome in yeast. PLoS Biol. 2009 May;7(5):e1000105. DOI:10.1371/journal.pbio.1000105 | PubMed ID:19419242 | HubMed [Paper21]
  5. Halbeisen RE, Scherrer T, and Gerber AP. Affinity purification of ribosomes to access the translatome. Methods. 2009 Jul;48(3):306-10. DOI:10.1016/j.ymeth.2009.04.003 | PubMed ID:19398006 | HubMed [Paper20]
  6. Hogan DJ, Riordan DP, Gerber AP, Herschlag D, and Brown PO. Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol. 2008 Oct 28;6(10):e255. DOI:10.1371/journal.pbio.0060255 | PubMed ID:18959479 | HubMed [Paper19]
  7. Hasegawa Y, Irie K, and Gerber AP. Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast. RNA. 2008 Nov;14(11):2333-47. DOI:10.1261/rna.1016508 | PubMed ID:18805955 | HubMed [Paper18]
  8. Galgano A, Forrer M, Jaskiewicz L, Kanitz A, Zavolan M, and Gerber AP. Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system. PLoS One. 2008 Sep 8;3(9):e3164. DOI:10.1371/journal.pone.0003164 | PubMed ID:18776931 | HubMed [Paper17]
  9. Muraro NI, Weston AJ, Gerber AP, Luschnig S, Moffat KG, and Baines RA. Pumilio binds para mRNA and requires Nanos and Brat to regulate sodium current in Drosophila motoneurons. J Neurosci. 2008 Feb 27;28(9):2099-109. DOI:10.1523/JNEUROSCI.5092-07.2008 | PubMed ID:18305244 | HubMed [Paper16]
  10. Halbeisen RE, Galgano A, Scherrer T, and Gerber AP. Post-transcriptional gene regulation: from genome-wide studies to principles. Cell Mol Life Sci. 2008 Mar;65(5):798-813. DOI:10.1007/s00018-007-7447-6 | PubMed ID:18043867 | HubMed [Paper15]
  11. Gerber AP, Luschnig S, Krasnow MA, Brown PO, and Herschlag D. Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster. Proc Natl Acad Sci U S A. 2006 Mar 21;103(12):4487-92. DOI:10.1073/pnas.0509260103 | PubMed ID:16537387 | HubMed [Paper14]
  12. Gerber AP, Herschlag D, and Brown PO. Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast. PLoS Biol. 2004 Mar;2(3):E79. DOI:10.1371/journal.pbio.0020079 | PubMed ID:15024427 | HubMed [Paper13]
  13. Shepard KA, Gerber AP, Jambhekar A, Takizawa PA, Brown PO, Herschlag D, DeRisi JL, and Vale RD. Widespread cytoplasmic mRNA transport in yeast: identification of 22 bud-localized transcripts using DNA microarray analysis. Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11429-34. DOI:10.1073/pnas.2033246100 | PubMed ID:13679573 | HubMed [Paper12]
  14. Wolf J, Gerber AP, and Keller W. tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli. EMBO J. 2002 Jul 15;21(14):3841-51. DOI:10.1093/emboj/cdf362 | PubMed ID:12110595 | HubMed [Paper11]
  15. Gerber AP and Keller W. RNA editing by base deamination: more enzymes, more targets, new mysteries. Trends Biochem Sci. 2001 Jun;26(6):376-84. PubMed ID:11406411 | HubMed [Paper10]
  16. Paupard M-C, O'Connell MA, Gerber AP, and Zukin RS. Patterns of developmental expression of the RNA editing enzyme rADAR2. Neuroscience. 2000;95(3):869-79. PubMed ID:10670454 | HubMed [Paper9]
  17. Keegan LP, Gerber AP, Brindle J, Leemans R, Gallo A, Keller W, and O'Connell MA. The properties of a tRNA-specific adenosine deaminase from Drosophila melanogaster support an evolutionary link between pre-mRNA editing and tRNA modification. Mol Cell Biol. 2000 Feb;20(3):825-33. PubMed ID:10629039 | HubMed [Paper8]
  18. Gerber AP and Keller W. An adenosine deaminase that generates inosine at the wobble position of tRNAs. Science. 1999 Nov 5;286(5442):1146-9. PubMed ID:10550050 | HubMed [Paper7]
  19. Maas S, Gerber AP, and Rich A. Identification and characterization of a human tRNA-specific adenosine deaminase related to the ADAR family of pre-mRNA editing enzymes. Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):8895-900. PubMed ID:10430867 | HubMed [Paper6]
  20. Keller W, Wolf J, and Gerber A. Editing of messenger RNA precursors and of tRNAs by adenosine to inosine conversion. FEBS Lett. 1999 Jun 4;452(1-2):71-6. PubMed ID:10376681 | HubMed [Paper5]
  21. Gerber A, Grosjean H, Melcher T, and Keller W. Tad1p, a yeast tRNA-specific adenosine deaminase, is related to the mammalian pre-mRNA editing enzymes ADAR1 and ADAR2. EMBO J. 1998 Aug 17;17(16):4780-9. DOI:10.1093/emboj/17.16.4780 | PubMed ID:9707437 | HubMed [Paper4]
  22. O'Connell MA, Gerber A, and Keegan LP. Purification of native and recombinant double-stranded RNA-specific adenosine deaminases. Methods. 1998 May;15(1):51-62. DOI:10.1006/meth.1998.0605 | PubMed ID:9614652 | HubMed [Paper3]
  23. Gerber A, O'Connell MA, and Keller W. Two forms of human double-stranded RNA-specific editase 1 (hRED1) generated by the insertion of an Alu cassette. RNA. 1997 May;3(5):453-63. PubMed ID:9149227 | HubMed [Paper2]
  24. O'Connell MA, Gerber A, and Keller W. Purification of human double-stranded RNA-specific editase 1 (hRED1) involved in editing of brain glutamate receptor B pre-mRNA. J Biol Chem. 1997 Jan 3;272(1):473-8. PubMed ID:8995285 | HubMed [Paper1]
All Medline abstracts: PubMed | HubMed