Difference between revisions of "Escherichia coli/Codon usage"

From OpenWetWare
Jump to: navigation, search
Line 1: Line 1:
 +
Source: This is reformatted from http://www.kazusa.or.jp/codon/.
 +
Note that their numbers have changed so they no longer match up exactly.
 +
 
Escherichia coli K12 [gbbct]: 5054 CDS's (1603901 codons)
 
Escherichia coli K12 [gbbct]: 5054 CDS's (1603901 codons)
 
* What this the source of this data?  Please state for your 14,000 page visitors!
 
  
 
{| class=sortable border=1
 
{| class=sortable border=1

Revision as of 08:40, 15 August 2012

Source: This is reformatted from http://www.kazusa.or.jp/codon/. Note that their numbers have changed so they no longer match up exactly.

Escherichia coli K12 [gbbct]: 5054 CDS's (1603901 codons)

Amino Acid Codon Total number #/1000 Fraction
Glycine GGG 17628.00 10.99 0.15
Glycine GGA 12696.00 7.92 0.11
Glycine GGT 39862.00 24.85 0.34
Glycine GGC 47212.00 29.44 0.40
Glutamate GAG 28529.00 17.79 0.31
Glutamate GAA 63484.00 39.58 0.69
Aspartate GAT 51670.00 32.22 0.63
Aspartate GAC 30559.00 19.05 0.37
Valine GTG 42097.00 26.25 0.37
Valine GTA 17443.00 10.88 0.15
Valine GTT 29487.00 18.38 0.26
Valine GTC 24406.00 15.22 0.22
Alanine GCG 53984.00 33.66 0.36
Alanine GCA 32529.00 20.28 0.21
Alanine GCT 24609.00 15.34 0.16
Alanine GCC 40914.00 25.51 0.27
Arginine AGG 1949.00 1.22 0.02
Arginine AGA 3291.00 2.05 0.04
Arginine CGG 8631.00 5.38 0.10
Arginine CGA 5668.00 3.53 0.06
Arginine CGT 33711.00 21.02 0.38
Arginine CGC 35311.00 22.02 0.40
Lysine AAG 16370.00 10.21 0.23
Lysine AAA 53920.00 33.62 0.77
Asparagine AAT 28256.00 17.62 0.45
Asparagine AAC 34752.00 21.67 0.55
Methionine ATG 44539.00 27.77 1.00
Isoleucine ATA 6866.00 4.28 0.07
Isoleucine ATT 48766.00 30.40 0.51
Isoleucine ATC 40097.00 25.00 0.42
Threonine ACG 23056.00 14.37 0.27
Threonine ACA 11267.00 7.02 0.13
Threonine ACT 14303.00 8.92 0.17
Threonine ACC 37495.00 23.38 0.44
Tryptophan TGG 24553.00 15.31 1.00
Stop TGA 1448.00 0.90 0.29
Cysteine TGT 8306.00 5.18 0.45
Cysteine TGC 10330.00 6.44 0.55
Stop TAG 365.00 0.23 0.07
Stop TAA 3244.00 2.02 0.64
Tyrosine TAT 26180.00 16.32 0.57
Tyrosine TAC 19675.00 12.27 0.43
Phenylalanine TTT 35930.00 22.40 0.57
Phenylalanine TTC 26609.00 16.59 0.43
Serine AGT 13976.00 8.71 0.15
Serine AGC 25716.00 16.03 0.28
Serine TCG 14305.00 8.92 0.15
Serine TCA 11438.00 7.13 0.12
Serine TCT 13633.00 8.50 0.15
Serine TCC 13783.00 8.59 0.15
Glutamine CAG 46256.00 28.84 0.65
Glutamine CAA 24787.00 15.45 0.35
Histadine CAT 20686.00 12.90 0.57
Histadine CAC 15595.00 9.72 0.43
Leucine TTG 22000.00 13.72 0.13
Leucine TTA 22279.00 13.89 0.13
Leucine CTG 84714.00 52.82 0.50
Leucine CTA 6182.00 3.85 0.04
Leucine CTT 17707.00 11.04 0.10
Leucine CTC 17715.00 11.04 0.10
Proline CCG 37316.00 23.27 0.52
Proline CCA 13664.00 8.52 0.19
Proline CCT 11291.00 7.04 0.16
Proline CCC 8861.00 5.52 0.12