Endy:Reprints: Difference between revisions
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'''Barry Canton'''<br> | '''Barry Canton'''<br> | ||
''Engineering the interface between cellular chassis and synthetic biological systems''<br> | ''Engineering the interface between cellular chassis and synthetic biological systems''<br> | ||
MIT PhD, 2008 [http://dspace.mit.edu/bitstream/handle/1721.1/44918/301953836.pdf?sequence=1 dissertation] (PDF)<br> | MIT PhD, 2008 [http://dspace.mit.edu/bitstream/handle/1721.1/44918/301953836.pdf?sequence=1 dissertation] (PDF), doi: 1721.1/44918<br> | ||
'''Jeff Gritton'''<br> | '''Jeff Gritton'''<br> | ||
''Architecture and evolutionary stability of yeast signaling pathways''<br> | ''Architecture and evolutionary stability of yeast signaling pathways''<br> | ||
MIT MS, 2006 [http://dspace.mit.edu/bitstream/handle/1721.1/37258/85844464.pdf?sequence=1 thesis] (PDF)<br> | MIT MS, 2006 [http://dspace.mit.edu/bitstream/handle/1721.1/37258/85844464.pdf?sequence=1 thesis] (PDF), doi: 1721.1/37258<br> | ||
'''Jason Kelly'''<br> | '''Jason Kelly'''<br> | ||
''Tools and reference standards supporting the engineering and evolution of synthetic biological systems''<br> | ''Tools and reference standards supporting the engineering and evolution of synthetic biological systems''<br> | ||
MIT PhD, 2008 [http://dspace.mit.edu/bitstream/handle/1721.1/44917/301953777.pdf?sequence=1 dissertation] (PDF)<br> | MIT PhD, 2008 [http://dspace.mit.edu/bitstream/handle/1721.1/44917/301953777.pdf?sequence=1 dissertation] (PDF), doi: 1721.1/44917<br> | ||
'''Sriram Kosuri'''<br> | '''Sriram Kosuri'''<br> | ||
''Simulation, models, and refactoring of bacteriophage T7 gene expression''<br> | ''Simulation, models, and refactoring of bacteriophage T7 gene expression''<br> | ||
MIT PhD, 2007 [http://dspace.mit.edu/bitstream/handle/1721.1/39912/182579919.pdf?sequence=1 dissertation] (PDF)<br> | MIT PhD, 2007 [http://dspace.mit.edu/bitstream/handle/1721.1/39912/182579919.pdf?sequence=1 dissertation] (PDF), doi: 1721.1/39912<br> | ||
'''Alex Mallet'''<br> | '''Alex Mallet'''<br> | ||
''Analysis of Targeted and Combinatorial Approaches to Phage T7 Genome Generation''<br> | ''Analysis of Targeted and Combinatorial Approaches to Phage T7 Genome Generation''<br> | ||
MIT MS, 2007 [http://dspace.mit.edu/bitstream/handle/1721.1/35880/MastersThesis.pdf?sequence=1 thesis] (PDF)<br> | MIT MS, 2007 [http://dspace.mit.edu/bitstream/handle/1721.1/35880/MastersThesis.pdf?sequence=1 thesis] (PDF), doi: 1721.1/35880<br> | ||
'''Reshma Shetty''' (co-advisee with Tom Knight<br> | '''Reshma Shetty''' (co-advisee with Tom Knight<br> | ||
''Applying engineering principles to the design and construction of transcriptional devices''<br> | ''Applying engineering principles to the design and construction of transcriptional devices''<br> | ||
MIT PhD, 2008 [http://dspace.mit.edu/bitstream/handle/1721.1/44921/302346650.pdf?sequence=1 dissertation] (PDF)<br> | MIT PhD, 2008 [http://dspace.mit.edu/bitstream/handle/1721.1/44921/302346650.pdf?sequence=1 dissertation] (PDF), doi: 1721.1/44921<br> | ||
'''Francois St-Pierre'''<br> | '''Francois St-Pierre'''<br> | ||
''Determination of cell fate selection during phage lambda infection''<br> | ''Determination of cell fate selection during phage lambda infection''<br> | ||
MIT PhD, 2009 [[Media:StPierre thesis rev2.PDF | dissertation]] (PDF)<br> | MIT PhD, 2009 [[Media:StPierre thesis rev2.PDF | dissertation]] (PDF), doi: pending<br> | ||
'''Samantha Sutton'''<br> | '''Samantha Sutton'''<br> | ||
''Engineering phosphorylation-dependent post-translational protein devices''<br> | ''Engineering phosphorylation-dependent post-translational protein devices''<br> | ||
MIT PhD, 2008 [http://dspace.mit.edu/bitstream/handle/1721.1/45205/301815200.pdf?sequence=1 dissertation] (PDF)<br> | MIT PhD, 2008 [http://dspace.mit.edu/bitstream/handle/1721.1/45205/301815200.pdf?sequence=1 dissertation] (PDF), doi: 1721.1/45205<br> | ||
'''Ty Thompson'''<br> | '''Ty Thompson'''<br> | ||
''Models and analysis of yeast mating response: tools for model building, from documentation to time-dependent stimulation''<br> | ''Models and analysis of yeast mating response: tools for model building, from documentation to time-dependent stimulation''<br> | ||
MIT PhD, 2008 [http://dspace.mit.edu/bitstream/handle/1721.1/45206/301815747.pdf?sequence=1 dissertation] (PDF)<br> | MIT PhD, 2008 [http://dspace.mit.edu/bitstream/handle/1721.1/45206/301815747.pdf?sequence=1 dissertation] (PDF), doi: 1721.1/45206<br> | ||
===Peer Reviewed Articles=== | ===Peer Reviewed Articles=== |
Revision as of 12:05, 22 July 2009
Student DissertationsBarry Canton Jeff Gritton Jason Kelly Sriram Kosuri Alex Mallet Reshma Shetty (co-advisee with Tom Knight Francois St-Pierre Samantha Sutton Ty Thompson Peer Reviewed ArticlesMeasuring the activity of BioBrick promoters using an in vivo reference standard Determination of cell fate selection during phage lambda infection Refinement and standardization of synthetic biological parts and devices Engineering BioBrick vectors from BioBrick parts Stimulus design for model selection and validation in cell signaling TABASCO: A single molecule, base-pair resolved gene expression simulator DNA synthesis and biological security Synthetic genomics: Options for governance Foundations for engineering biology Refactoring bacteriophage T7 Regulated cell to cell variation in a cell fate decision system Modelling cellular behaviour (insight feature) Computation, prediction, and experimental test of fitness for bacteriophage T7 mutants with permuted genomes Toward antiviral strategies that resist viral escape Intracellular kinetics of a growing virus: A genetically-structured simulation for bacteriophage T7 Transcribed LecturesSynthetic biology: Can we make biology easy to engineer? <--note: transcription was not proofed Other Articles, Not Peer ReviewedCribsheet #16: Synthetic Biology Reconstruction of the genomes Building a fab for biology A biological engineer searches for simplicity Useful construction 2003 Synthetic Biology study Molecular monogamy Decoding NF-kB signaling A standard parts list for biological circuitry BooksAdventures in synthetic biology Book ChaptersSynthetic Biology Towards a predictive biology: The example of bacteriophage T7 Selected Online Lectures or DebatesSynthetic Biology Debate: Drew Endy & Jim Thomas Programming DNA: A 2-bit language for engineering biology |