Difference between revisions of "Endy:PiP"

From OpenWetWare
Jump to: navigation, search
(FSP #1: Deterministic cell fate selection during phage lambda infection)
m (Blank #1: Title, or equivalent)
 
(29 intermediate revisions by 3 users not shown)
Line 6: Line 6:
 
===Research Manuscripts===
 
===Research Manuscripts===
  
===='''<font color="green">FSP #1</font>''': ''Deterministic cell fate selection during phage lambda infection''====
 
*Authors: FSP, DE
 
*Status: Manuscript submitted to PNAS Track II on 5 September
 
  
===='''<font color="green">Barry #1</font>''': ''Towards a biological virtual machine: an autoregulating network of RNA polymerases and ribosomes in Escherichia coli'', or equivalent====
+
 
 +
===='''<font color="green">Barry #1</font>''': ''Model-based forward engineering of autocatalytic, self-regulating, and orthogonal gene expression systems in Escherichia coli''====
 
*Authors: Barry, Drew
 
*Authors: Barry, Drew
*Status: RNA work underway, Barry praying for good RNA data, Barry coordinating getting some micrographs and perhaps cytometer data
+
*Status: Drew drafting for PNAS
*Writing: First outline complete and under revision, Figures discussed
+
*Writing: On Google Docs
 
*[[User:Barry Canton/Notebook/T7 RNAP transcription of rRNA | Project page]] & [[Endy:Chassis engineering/Paper|Paper page]].
 
*[[User:Barry Canton/Notebook/T7 RNAP transcription of rRNA | Project page]] & [[Endy:Chassis engineering/Paper|Paper page]].
*<font color="red">Goal</font>: Submit by September 15
+
*<font color="red">Goal</font>: Submit June 2009
 
 
===='''<font color="green">Jason #1</font>''': ''Measurement kits and reference standards for characterizing BioBrick promoters and ribosome binding sites''====
 
*Authors: JK & DE
 
*Status: reviews received, JK and DE struggling through standards theory
 
*[[Endy:Measkit_draft | Open questions]]
 
*[[Endy:Measkit_PLO | New paragraph level outline]]
 
*<font color="red">Goal</font>: Resubmit by end of August
 
  
===='''<font color="green">Jason #2</font>''': ''Programmed selection and preferential promotion of disadvantaged bacteria in a microfluidic sortostat,'' or equivalent====
+
===='''<font color="green">Jason #2</font>''': ''Programmed selection and preferential promotion of microbes using a selectostat''====
 
*Authors: JK & DE
 
*Authors: JK & DE
*Status: Modeling scope, data analysis and writing needs to be completed
+
*Status: Endy drafting for PNAS
 +
*Main Text on Google Docs
 +
*Figures
 +
*Supplement
 
*[[Endy:Notebook/Sortostat_Paper | OWW Page]]
 
*[[Endy:Notebook/Sortostat_Paper | OWW Page]]
*<font color="red">Goal</font>: Submit by end of August
+
*<font color="red">Goal</font>: Submit June 2009
  
 
===='''<font color="green">Reshma #1</font>''': ''Using genetically encoded odorant reporters to engineer bacteria that smell like wintergreen and banana''====
 
===='''<font color="green">Reshma #1</font>''': ''Using genetically encoded odorant reporters to engineer bacteria that smell like wintergreen and banana''====
 
*Authors: RS & DE
 
*Authors: RS & DE
 
*Status: reviews received, revision complete, sent to RC3 for his comments
 
*Status: reviews received, revision complete, sent to RC3 for his comments
*<font color="red">Goal</font>: Resubmit by end of August
+
*<font color="red">Goal</font>: submitted
  
 
===='''<font color="green">Reshma #2</font>''': ''Signal levels, load, and error rates in engineered transcriptional devices''====
 
===='''<font color="green">Reshma #2</font>''': ''Signal levels, load, and error rates in engineered transcriptional devices''====
Line 57: Line 51:
 
===='''<font color="green">Ty #2</font>''': ''Scaffold number in yeast signaling system sets tradeoff between system output and dynamic range''====
 
===='''<font color="green">Ty #2</font>''': ''Scaffold number in yeast signaling system sets tradeoff between system output and dynamic range''====
 
*Authors: TT, DE
 
*Authors: TT, DE
*Status: sent to RB and TT for final review and approval
+
*Status: Submitted to MSB
*<font color="red">Goal</font>: Submit by end of August
+
*<font color="red">Goal</font>: Get published ASAP.
  
 
===='''<font color="green">Ty #3</font>''': ''Mechanics, Controls, and Modeling of Mating Pheromone-Initiated Signaling in the Yeast Saccharomyces cerevisiae:  A Comprehensive Analysis''====
 
===='''<font color="green">Ty #3</font>''': ''Mechanics, Controls, and Modeling of Mating Pheromone-Initiated Signaling in the Yeast Saccharomyces cerevisiae:  A Comprehensive Analysis''====
Line 98: Line 92:
 
*Status: your names here
 
*Status: your names here
 
*<font color="red">Goal</font>: Submit by some date
 
*<font color="red">Goal</font>: Submit by some date
 +
 +
{{ShowGoogleExcel|id=pPNCEiE71Bq1I759bMAFhTg|width=800|height=600}}
 +
 +
{{ShowGoogleWord|id=d7z7wrm_5cgnvmwcn|width=800|height=600}}

Latest revision as of 14:04, 16 June 2009

BMPanorama.jpg

Home        Teams        Research        Notebooks        Publications        Internal        Contact       


This page is for keeping track of the status of papers in the Endy writing queue.


Research Manuscripts

Barry #1: Model-based forward engineering of autocatalytic, self-regulating, and orthogonal gene expression systems in Escherichia coli

  • Authors: Barry, Drew
  • Status: Drew drafting for PNAS
  • Writing: On Google Docs
  • Project page & Paper page.
  • Goal: Submit June 2009

Jason #2: Programmed selection and preferential promotion of microbes using a selectostat

  • Authors: JK & DE
  • Status: Endy drafting for PNAS
  • Main Text on Google Docs
  • Figures
  • Supplement
  • OWW Page
  • Goal: Submit June 2009

Reshma #1: Using genetically encoded odorant reporters to engineer bacteria that smell like wintergreen and banana

  • Authors: RS & DE
  • Status: reviews received, revision complete, sent to RC3 for his comments
  • Goal: submitted

Reshma #2: Signal levels, load, and error rates in engineered transcriptional devices

  • Authors: RS & DE
  • Status: RS working on figures
  • Goal: Submit by end of August

Samantha #1: Controlling cellular location by engineering phosphorylation

  • Authors: SS & DE
  • Status: In review at PLoS Biology
  • Goal: Have in press in 2008

Samantha #2: Signals and specifications for a family of phosphorylation-dependent devices, or equivalent

  • Authors: SS & DE
  • Status: Outline and structure finalized, SS leading writing
  • Goal: Submit by end of August

Ty #1: Tools for making systems biology models more scientific

  • Authors: TT, DE
  • Status: DE to do final edit, send to RB and TT for final approval
  • Goal: Submit by end of August

Ty #2: Scaffold number in yeast signaling system sets tradeoff between system output and dynamic range

  • Authors: TT, DE
  • Status: Submitted to MSB
  • Goal: Get published ASAP.

Ty #3: Mechanics, Controls, and Modeling of Mating Pheromone-Initiated Signaling in the Yeast Saccharomyces cerevisiae: A Comprehensive Analysis

  • Authors: TT, DE
  • Status: JT and TT to edit (not working well, what should DE do?)
  • Goal: Submit by ???

Sri #1: Measures & models of phage T7 mRNA

  • Authors: HK, DE, SK
  • Status: Sri needs to provide Fig 4, Drew needs to edit
  • Goal: Submit by end of August

Drew #1: A common signal carrier for genetic devices

  • Authors: Austin, Drew, Tom, Randy, Samantha
  • Status: DE to expand and rewrite
  • Goal: Submit by end of August

Drew #2: Free as in phosphoramidites, or equivalent

  • Authors: DG and DE
  • Status: DE to write
  • Goal: Submit by end of August

BOOKS

DE #1:CoTS

  • Authors: DE
  • Status: DE outlining
  • Goal: Proposal by end of August

DE #2:I2SB

  • Authors: DE
  • Status: DE outlining
  • Goal: Outline by end of August

BLANK

Blank #1: Title, or equivalent

  • Authors: your names here
  • Status: your names here
  • Goal: Submit by some date

{{#widget:Google Spreadsheet |key=pPNCEiE71Bq1I759bMAFhTg |width=800 |height=600 }}

{{#widget:Google Documents |key=d7z7wrm_5cgnvmwcn |width=800 |height=600 }}