Ellis:Publications

Click the links to read our papers

We're in the lab right now working on new publications. Latest Update: JAN 2014

	Title	Authors	Published	PDF	Screenshot
Synthetic Biology	R2oDNA Designer: Computational Design of Biologically Neutral Synthetic DNA Sequences	Casini A, Christodoulou G, Freemont P, Baldwin GS, Ellis T, Macdonald JT	ACS Synthetic Biology, Jan 2014 DOI Link	View PDF	R2o
	R2oDNA Designer: Computational Design of Biologically Neutral Synthetic DNA Sequences	Casini A, Christodoulou G, Freemont P, Baldwin GS, Ellis T, Macdonald JT	ACS Synthetic Biology, Jan 2014 DOI Link	View PDF	R2o
	Predicting translation initiation rates for designing synthetic biology	Reeve B, Hargest T, Gilbert C, Ellis T	Front. Bioeng. Biotechnol, Jan 2014 DOI Link	View PDF	Frontiers
	One-pot DNA construction for synthetic biology: the Modular Overlap-Directed Assembly with Linkers (MODAL) strategy	Casini A, Macdonald JT, De Jonghe J, Christodoulou G, Freemont P, Baldwin GS, Ellis T	Nucleic Acids Research, Oct 2013 DOI Link	View PDF	NAR
	Modelling the burden caused by gene expression: an in silico investigation into the interactions between synthetic gene circuits and their chassis cell	Algar R, Ellis T, Stan GB	arXiv Q-Bio, Sep 2013 DOI Link	View PDF	arXiv Q-Bio
	Creation and characterization of component libraries for synthetic biology	Weenink T, Ellis T	Methods in Molecular Biology, 2013, Vol 1073, Page 51 DOI Link	Book Chapter	Methods in Mol Biol
	Characterisation of genetic control elements for synthetic biology using the Spinach RNA aptamer	Pothoulakis G, Ceroni F, Reeve B, Ellis T	ACS Synthetic Biology, Sept 2013 DOI Link	View PDF	ACS Syn Bio
	Engineering of regulated stochastic cell fate determination	Wu W, Su RQ, Ellis T, Lai YC, Wang X	PNAS USA, 2013, Vol 110, Page 10610 DOI Link	View PDF	PNAS USA
	Building-in Biosafety for Synthetic Biology	Wright O, Stan GB, Ellis T	Microbiology, 2013, Vol 159, Page 1221 DOI Link	View PDF	Microbiology
	Rational Diversification of a Promoter Providing Fine-Tuned Expression and Orthogonal Regulation for Synthetic Biology	Blount BA, Weenink T, Vasylechko S, Ellis T	PLoS One, 2012, Vol 7, Page e33279 DOI Link	View PDF	PLoS One
	Construction of synthetic regulatory networks in yeast	Blount BA, Weenink T, Ellis T	FEBS Letters, 2012, Vol 586, Page 2112 DOI Link	View PDF	FEBS Letters
	DNA assembly for synthetic biology: from parts to pathways and beyond	Ellis T, Adie T, Baldwin GS	Integrative Biology, 2011, Vol 3, Page 109 DOI Link	View PDF	Integrative Biology
	Diversity-based, model-guided construction of synthetic gene networks with predicted functions	Ellis T, Wang X, Collins JJ	Nature Biotechnology, 2009, Vol 27, Page 465 DOI Link	View PDF	Nature Biotech
	Synthesis and screening of regulatory component libraries for synthetic biology	Ellis T	Nature Protocols, 2009 DOI Link	View PDF	Nature Protocols
	Gene regulation: hacking the network on a sugar high	Ellis T, Wang X, Collins JJ	Molecular Cell, 2008, Vol 30, Page 1 DOI Link	View PDF	Mol Cell
DNA-Binding	An Extended PBD-Polyamide Conjugate with Selectivity for the ICB2 Transcription Factor Binding Site	Brucoli F, Hawkins RM, James CH, Jackson PJM, Wells G, Jenkins TC, Ellis T, Kotecha M, Hochhauser D, Hartley JA, Howard PW, Thurston DE	J Med Chem, 2013, Vol 56, Page 6339 DOI Link	View PDF	J Med Chem
	Novel C8-linked pyrrolobenzodiazepine (PBD)-heterocycle conjugates that recognize DNA sequences containing an inverted CCAAT box	Brucoli F, Hawkins RM, James CH, Wells G, Jenkins TC, Ellis T, Hartley JA, Howard PW, Thurston DE	Bioorg Med Chem Letters, 2011, Vol 21, Page 3780 DOI Link	View PDF	Bioorg Med Chem Lett
	Molecular recognition of DNA by rigid [N]-polynorbornane derived bifunctional intercalators: synthesis and evaluation of their binding properties	Van Vliet LD, Ellis T, Foley PJ, Liu L, Pfeffer FM, Russell RA, Warrener RN, Hollfelder F, Waring MJ	Journal of Medicinal Chemistry, 2007, Vol 50, Page 2326 DOI Link	View PDF	J Med Chem
	A 96-well DNase I footprinting screen for drug-DNA interactions	Ellis T, Evans DA, Martin CR, Hartley JA	Nucleic Acids Research, 2007, Vol 35 DOI Link	View PDF	NAR
	Sequence-selective interaction of the minor-groove interstrand cross-linking agent SJG-136 with naked and cellular DNA: footprinting and enzyme inhibition studies	Martin C, Ellis T, McGurk CJ, Jenkins TC, Hartley JA, Waring MJ, Thurston DE	Biochemistry, 2005, Vol 44, Page 4135 DOI Link	View PDF	Biochemistry
	DNase I footprinting of small molecule binding sites on DNA	Bailly C, Kluza J, Martin C, Ellis T, Waring MJ	Methods in Molecular Biology, 2005, Vol 288, Page 319 DOI Link	Book Chapter	Meth Mol Biol