Difference between revisions of "ChemEng575Docs"

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__NOTOC__
 
__NOTOC__
== Week 1 ==
+
== Schedule for Semester ==
'''Reading'''<br>
+
Updated 4-12-17<br>
Tissue Engineering Chapters 1-4<br>
+
[[Image:575_Schedule_2017.jpg | 750px]]<br>
External Reading: Sharp/Langer, Promoting Convergence [http://www.ncbi.nlm.nih.gov/pubmed?term=sharp%20langer%20promoting%20convergence pubmed link]<br>
 
External Reading: Huebsch and Mooney, Biomaterials [http://www.ncbi.nlm.nih.gov/pubmed/19940912 pubmed link]<br>
 
  
'''Lecture Slides'''<br>
+
== Lecture Slides and Assigned Reading == 
[[Media:590B_Lecture_1.pptx |Lecture 1 Slides]]<br>
+
[[Media:575_Lecture_1.pptx |Lecture 1 (1/24/17) Slides]] Reading: Chapter 1 of the wiki book [[575 Wikis]] <br>
[[Media:590B_Lecture_2.pptx |Lecture 2 Slides]]<br>
+
[[Media:575_Lecture_2.pptx |Lecture 2 (1/26/17) Slides]] Reading: Chapter 1 of the wiki book [[575 Wikis]] <br>
 +
Lecture 3 (1/31/17) Reading: Paper Review [[590B Lit Schedule|Paper Titles, Schedule]] <br>
 +
[[Media:575_Lecture_4.pptx |Lecture 4 (2/2/17) Slides]] Reading: Chapter 2 of the wiki book [[575 Wikis]] <br>
 +
[[Media:575_Lecture_5.pptx |Lecture 5 (2/7/17) Slides]] Reading: Chapter 2 of the wiki book [[575 Wikis]] <br>
 +
[[Media:575_Lecture_6.pptx |Lecture 6 (2/14/17) Slides]] Reading: Chapter 3 of the wiki book [[575 Wikis]] <br>
 +
Lecture 7 (2/16/17) Reading: Paper Review [[590B Lit Schedule|Paper Titles, Schedule]] <br>
 +
[[Media:575_Lecture_8.pptx |Lecture 8 (2/21/17) Slides]] Reading: Chapters 3 and 4 of the wiki book [[575 Wikis]] <br>
 +
Lecture 9 (2/23/17) Reading: Paper Review [[590B Lit Schedule|Paper Titles, Schedule]] - [[Media:Paper_3_disc.docx |Paper Review Sheet]]<br>
 +
[[Media:575_Lecture_10.pptx |Lecture 10 (2/28/17) Slides]] Reading: Chapter 7 of the wiki book [[575 Wikis]] <br>
 +
Lecture 11 (3/2/17) No Slides. We worked on vascularization problems together. Reading: Chapters 1, 4, and 7 of the wiki book [[575 Wikis]] <br>
 +
[[Media:575_Lecture_12.pdf |Lecture 12 (3/9/17) Slides]] Reading: Chapter 8 of the wiki book [[575 Wikis]] <br>
 +
Lecture 13 (3/21/17) Reading: Paper Review [[590B Lit Schedule|Paper Titles, Schedule]] <br>
 +
[[Media:575_Lecture_14.pptx |Lecture 14 (3/23/17) Slides]] Reading: [http://grants.nih.gov/grants/funding/424/SF424_RR_Guide_General_VerC.pdf NIH Grants Guide] <br>
 +
Lecture 15 (3/28/17) No Slides. Reading: Chapter 4 of the wiki book [[575 Wikis]] <br>
 +
[[Media:575_Lecture_16.pptx |Lecture 16 (3/30/17) Slides]] Reading: Chapter 8 of the wiki book [[575 Wikis]] <br>
 +
[[Media:probset8solns.xlsx |Problem Set 8 Solutions]] <br>
 +
Lecture 17 No Slides. (4/4/17) Reading: Chapter 4 of the wiki book [[575 Wikis]] <br>
 +
Lecture 18 (4/6/17) Reading: Paper Review [[590B Lit Schedule|Paper Titles, Schedule]] <br>
 +
Lecture 19 (4/11/17) No Slides. Grant review day. See grants for each group below.<br>
 +
Lecture 20 (4/13/17) No Slides. 4 wiki presentations this day. <br>
 +
Lecture 21 (4/20/17) No Slides. Lecture is Dr. Platt Seminar (LSL S330). <br>
 +
Lecture 22 (4/25/17) Reading: Paper Review [[590B Lit Schedule|Paper Titles, Schedule]] <br>
  
== Week 2 ==
+
== Literature Review ==
 +
Here's where you can find the schedule of journal papers: [[590B Lit Schedule|Paper Titles, Schedule]] <br>
  
 
+
== Grants for Review Day (4/11) ==  
''anything below here hasn't been updated for 2013 yet''
+
[[Media:575_Grant1_2017.pdf |Grant 1]]<br>
***
+
[[Media:575_Grant2_2017.pdf |Grant 2]]<br>
 
+
[[Media:575_Grant3_2017.pdf |Grant 3]]<br>
== Week 8 ==
+
[[Media:575_Grant4_2017.pdf |Grant 4]]<br>
Lecture 12, 3/13: <br>
+
[[Media:575_Grant5_2017.pdf |Grant 5]]<br>
Collective cell migration review [http://pubs.rsc.org/en/content/articlelanding/2010/ib/c0ib00052c IBiol link]<br>
+
[[Media:575_Grant6_2017.pdf |Grant 6]]<br>
Individual vs collective migration [http://jcb.rupress.org/content/188/1/11.full JCB link]<br>
 
 
 
== Week 7 ==
 
Lecture 11, 3/8: <br>
 
See your lecture slides!
 
 
 
== Week 6 ==
 
Lecture 8, 2/28: <br>
 
Patterned RGDs [http://onlinelibrary.wiley.com/doi/10.1002/anie.201002699/abstract Wiley link]<br>
 
Engineered surfaces review [http://www.ncbi.nlm.nih.gov/pubmed/19864174 pubmed link]<br>
 
biphasic migration [http://www.ncbi.nlm.nih.gov/pubmed/8335696 pubmed link]<br>
 
microfluidics [http://www.ncbi.nlm.nih.gov/pubmed/15986641 pubmed link]<br>
 
 
 
Lecture 9, 3/1: <br>
 
first stiffness/migration paper [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1300921/ pubmed link]<br>
 
gradients and stiffness [http://pubs.acs.org/doi/abs/10.1021/la026403p ACS link]<br>
 
biphasic migration and stiffness [http://www.ncbi.nlm.nih.gov/pubmed/15669099 pubmed link]<br>
 
3D stiffness in collagen [http://www.ncbi.nlm.nih.gov/pubmed/18621811 pubmed link]<br>
 
3D scaffold stiffness [http://www.ncbi.nlm.nih.gov/pubmed/21191996 pubmed link]<br>
 
3D matrigel stiffness [http://www.pnas.org/content/103/29/10889 PNAS link]<br>
 
 
 
== Week 5 ==
 
External Reading: Patterning of growth factors [http://www.ncbi.nlm.nih.gov/pubmed/18850272 pubmed link]<br>
 
External Reading: Modeling Interstitial flow [http://www.ncbi.nlm.nih.gov/pubmed/16603487 pubmed link]<br>
 
External Reading: Chemotaxis assays review [http://www.ncbi.nlm.nih.gov/pubmed/20023801 pubmed link]<br>
 
External Reading: Chemotaxis and directed migration [http://www.ncbi.nlm.nih.gov/pubmed/19603038 pubmed link]<br>
 
 
 
== Week 4 ==
 
External Reading: All are ECM and cancer
 
1: [http://www.ncbi.nlm.nih.gov/pubmed/19931152 pubmed link]<br>
 
2: [http://www.ncbi.nlm.nih.gov/pubmed/16169468 pubmed link]<br>
 
3: [http://www.ncbi.nlm.nih.gov/pubmed/17190588 pubmed link]<br>
 
 
 
== Week 3 ==
 
'''CELL ADHESION'''<br>
 
External Reading: Self-assembled monolayers [http://www.ncbi.nlm.nih.gov/pubmed/15005605 pubmed link]<br>
 
External Reading: adhesion and stem cell differentiation [http://www.ncbi.nlm.nih.gov/pubmed/15068789 pubmed link]<br>
 
External Reading: cell size and death [http://www.ncbi.nlm.nih.gov/pubmed/8171320 pubmed link]<br>
 
 
 
== Week 2 ==
 
'''STEM CELLS'''<br>
 
External Reading: Comprehensive stem cell review [http://www.ncbi.nlm.nih.gov/pubmed/10647940 pubmed link]<br>
 
 
 
'''MSCs'''<br>
 
External Reading: MSC differentiation potential [http://www.ncbi.nlm.nih.gov/pubmed/10102814 pubmed link]<br>
 
External Reading: Engler, MSCs and stiffness [http://www.ncbi.nlm.nih.gov/pubmed/16923388 pubmed link]<br>
 
 
 
'''ESCs'''<br>
 
External Reading: ESCs from blastocysts [http://www.ncbi.nlm.nih.gov/pubmed/14999088 pubmed link]<br>
 
External Reading: ESCs from blastocysts, 2 [http://www.ncbi.nlm.nih.gov/pubmed/9804556 pubmed link]<br>
 
External Reading: Geron's ESC-to-oligodendrocyte [http://www.ncbi.nlm.nih.gov/pubmed/15888645 pubmed link]<br>
 
 
 
'''HSCs'''<br>
 
External Reading: HSC to hepatocyte differentiation [http://www.ncbi.nlm.nih.gov/pubmed/11062533 pubmed link]<br>
 
External Reading: Transplanting HSCs [http://www.ncbi.nlm.nih.gov/pubmed/16641398 pubmed link]<br>
 
 
 
'''iPSCs'''<br>
 
External Reading: Seminal iPSC paper [http://www.ncbi.nlm.nih.gov/pubmed/16904174 pubmed link]<br>
 

Latest revision as of 11:37, 17 April 2017

File:575 web header 2-01.tif

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Schedule for Semester

Updated 4-12-17
575 Schedule 2017.jpg

Lecture Slides and Assigned Reading

Lecture 1 (1/24/17) Slides Reading: Chapter 1 of the wiki book 575 Wikis
Lecture 2 (1/26/17) Slides Reading: Chapter 1 of the wiki book 575 Wikis
Lecture 3 (1/31/17) Reading: Paper Review Paper Titles, Schedule
Lecture 4 (2/2/17) Slides Reading: Chapter 2 of the wiki book 575 Wikis
Lecture 5 (2/7/17) Slides Reading: Chapter 2 of the wiki book 575 Wikis
Lecture 6 (2/14/17) Slides Reading: Chapter 3 of the wiki book 575 Wikis
Lecture 7 (2/16/17) Reading: Paper Review Paper Titles, Schedule
Lecture 8 (2/21/17) Slides Reading: Chapters 3 and 4 of the wiki book 575 Wikis
Lecture 9 (2/23/17) Reading: Paper Review Paper Titles, Schedule - Paper Review Sheet
Lecture 10 (2/28/17) Slides Reading: Chapter 7 of the wiki book 575 Wikis
Lecture 11 (3/2/17) No Slides. We worked on vascularization problems together. Reading: Chapters 1, 4, and 7 of the wiki book 575 Wikis
Lecture 12 (3/9/17) Slides Reading: Chapter 8 of the wiki book 575 Wikis
Lecture 13 (3/21/17) Reading: Paper Review Paper Titles, Schedule
Lecture 14 (3/23/17) Slides Reading: NIH Grants Guide
Lecture 15 (3/28/17) No Slides. Reading: Chapter 4 of the wiki book 575 Wikis
Lecture 16 (3/30/17) Slides Reading: Chapter 8 of the wiki book 575 Wikis
Problem Set 8 Solutions
Lecture 17 No Slides. (4/4/17) Reading: Chapter 4 of the wiki book 575 Wikis
Lecture 18 (4/6/17) Reading: Paper Review Paper Titles, Schedule
Lecture 19 (4/11/17) No Slides. Grant review day. See grants for each group below.
Lecture 20 (4/13/17) No Slides. 4 wiki presentations this day.
Lecture 21 (4/20/17) No Slides. Lecture is Dr. Platt Seminar (LSL S330).
Lecture 22 (4/25/17) Reading: Paper Review Paper Titles, Schedule

Literature Review

Here's where you can find the schedule of journal papers: Paper Titles, Schedule

Grants for Review Day (4/11)

Grant 1
Grant 2
Grant 3
Grant 4
Grant 5

Grant 6