Chan:Publications: Difference between revisions
No edit summary |
mNo edit summary |
||
(30 intermediate revisions by the same user not shown) | |||
Line 6: | Line 6: | ||
</font> | </font> | ||
<br> | <br> | ||
[http://www-plb.ucdavis.edu/ | [http://www-plb.ucdavis.edu/ Department of Plant Biology], [http://www.ucdavis.edu/ UC Davis] and [http://www.hhmi.org HHMI] | ||
</center> | </center> | ||
---- | ---- | ||
Line 34: | Line 34: | ||
|width=800px class="MainPageBG" style="border: 0px solid #cc3300; background-color: #ffffff"| | |width=800px class="MainPageBG" style="border: 0px solid #cc3300; background-color: #ffffff"| | ||
<div style="padding: .4em .9em .9em"> | <div style="padding: .4em .9em .9em"> | ||
Links for UC Davis papers lead to the pdf file.<br> | |||
<br> | |||
• Melters, D.P., Paliulis L.V., Korf I.F. and Chan, S.W.L.<br> | |||
Holocentric chromosomes: convergent evolution, meiotic adaptations, and genomic analysis<br> | |||
[[:Image:2012 Daniel holocentric review Chromosome Research.pdf|Chromosome Research, published online (2012)]] [review article]<br> | |||
• Talbert, P., 40 middle authors listed alphabetically including Chan, S.W.L., and Henikoff, S.<br> | |||
A unified phylogeny-based nomenclature for histone variants<br> | |||
[[:Image:2012 Talbert nomenclature Epigenetics and Chromatin.pdf|Epigenetics and Chromatin, 5, 7 (2012)]] | |||
• Wijnker, E.*, van Dun, K*, de Snoo, C.B., Lelivelt, C.L., Keurentjes, J.J., Naharudin, N.S., Ravi, M., Chan, S.W., de Jong, H. and Dirks, R.<br> | |||
Reverse breeding in Arabidopsis generates homozygous parental lines from a heterozygous plant<br> | |||
[[:Image:2012 Erik reverse breeding Nature Genetics.pdf|Nature Genetics, 44, 467–470 (2012)]] (* equal contribution)<br> | |||
• Seymour, D.K., Filiault, D., Henry, I.M., Monson-Miller, J., Ravi, M., Pang, A., Comai, L., Chan, S.W. and Maloof, J.N.<br> | |||
<br> | Rapid creation of Arabidopsis doubled haploid lines for quantitative trait locus mapping<br> | ||
• Ravi, M., Shibata, F., Ramahi, J.S., Nagaki, K., Chen, C., Murata, M. | [[:Image:2012 Danelle DH for QTL PNAS.pdf|PNAS, 109, 4227-4232 (2012)]]<br> | ||
• Chan, S.W.L.<br> | |||
In a battle between parental chromosomes, a failure to reload<br> | |||
[[:Image:2011 Chan commentary PNAS.pdf|PNAS, 108, 13361-13362 (2011)]] [news and views article]<br> | |||
• Ravi, M., Shibata, F., Ramahi, J.S., Nagaki, K., Chen, C., Murata, M. and Chan, S.W.L.<br> | |||
Meiosis-specific loading of the centromere-specific histone CENH3 in ''Arabidopsis thaliana''<br> | Meiosis-specific loading of the centromere-specific histone CENH3 in ''Arabidopsis thaliana''<br> | ||
PLoS Genetics, | [[:Image:2011 Ravi meiosis PLoS Genetics.pdf|PLoS Genetics, 7, e1002121 (2011)]]<br> | ||
• Marimuthu, M.P.A.*, Jolivet, S.*, Ravi, M.*, Pereira, L., Davda, J.N., Cromer, L., Wang, L., Nogué, F., Chan, S.W.L.#, Siddiqi, I.# | • Marimuthu, M.P.A.*, Jolivet, S.*, Ravi, M.*, Pereira, L., Davda, J.N., Cromer, L., Wang, L., Nogué, F., Chan, S.W.L.#, Siddiqi, I.# and Mercier, R.#<br> | ||
Synthetic clonal reproduction through seeds<br> | Synthetic clonal reproduction through seeds<br> | ||
[ | [[:Image:2011 Marimuthu cloning Science.pdf|Science, 331, 876 (2011)]], also see the [[:Image:2011 Marimuthu cloning Science SOM.pdf|Supplementary Online Material]] (* equal contribution, # corresponding authors)<br> | ||
(* equal contribution, # corresponding authors)<br> | |||
• Chan, S.W.L.<br> | • Chan, S.W.L.<br> | ||
Chromosome engineering: power tools for plant genetics<br> | Chromosome engineering: power tools for plant genetics<br> | ||
[ | [[:Image:2010 Chan chromosome engineering Trends Biotech.pdf|Trends in Biotechnology, 12, 605-10 (2010)]] [review article]<br> | ||
• Ravi, M., Kwong, P.N., Menorca, R.M.G., Valencia, J.T., Ramahi, J.S., Stewart, J.L., Tran, R.K., Sundaresan, V., Comai, L. and Chan, S.W.L.<br> | • Ravi, M., Kwong, P.N., Menorca, R.M.G., Valencia, J.T., Ramahi, J.S., Stewart, J.L., Tran, R.K., Sundaresan, V., Comai, L. and Chan, S.W.L.<br> | ||
The rapidly evolving centromere-specific histone has stringent functional | The rapidly evolving centromere-specific histone has stringent functional requirements in ''Arabidopsis thaliana''<br> | ||
requirements in ''Arabidopsis thaliana''<br> | [[:Image:2010 Ravi cenh3 Genetics.pdf|Genetics, 186, 461–471 (2010)]]<br> | ||
[ | |||
• Ravi, M. and Chan, S.W.L.<br> | • Ravi, M. and Chan, S.W.L.<br> | ||
Haploid plants produced by centromere-mediated genome elimination<br> | Haploid plants produced by centromere-mediated genome elimination<br> | ||
[ | [[:Image:2010 Ravi haploids Nature.pdf|Nature, 464, 615-618 (2010)]]<br> | ||
• Chan, S.W.L. <br> | • Chan, S.W.L. <br> | ||
Inputs and outputs for chromatin-targeted RNAi<br> | Inputs and outputs for chromatin-targeted RNAi<br> | ||
[ | [[:Image:2008 Chan RNAi review TiPS.pdf|Trends in Plant Sciences, 13, 383-9 (2008)]] [review article]<br> | ||
<br> | <br> | ||
<b>Before UC Davis:</b><br> | <b>Before UC Davis:</b><br> | ||
Line 83: | Line 100: | ||
• Zhang, X.*, Yazaki, J.*, Sundaresan, A.*, Cokus, S.*, Chan, S.W.L., Chen, H., Henderson, I.R., Shinn, P., Pellegrini, M., Jacobsen, S.E., and Ecker, J.R.<br> | • Zhang, X.*, Yazaki, J.*, Sundaresan, A.*, Cokus, S.*, Chan, S.W.L., Chen, H., Henderson, I.R., Shinn, P., Pellegrini, M., Jacobsen, S.E., and Ecker, J.R.<br> | ||
Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in ''Arabidopsis''.<br> | Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in ''Arabidopsis''.<br> | ||
[http://www.ncbi.nlm.nih.gov/pubmed/16949657 Cell 126, 1189-1201 (2006)] | [http://www.ncbi.nlm.nih.gov/pubmed/16949657 Cell 126, 1189-1201 (2006)] (* equal contribution) | ||
(* | |||
• Li, C.F., Pontes, O., El-Shami, M., Henderson, I.R., Bernatavichute, Y.V., Chan, S.W.L., Lagrange, T., Pikaard, C.S. and Jacobsen, S.E.<br> | • Li, C.F., Pontes, O., El-Shami, M., Henderson, I.R., Bernatavichute, Y.V., Chan, S.W.L., Lagrange, T., Pikaard, C.S. and Jacobsen, S.E.<br> | ||
Line 96: | Line 112: | ||
• Chan, S.W.L.*, Henderson, I.R.* and Jacobsen, S.E.<br> | • Chan, S.W.L.*, Henderson, I.R.* and Jacobsen, S.E.<br> | ||
Gardening the genome: DNA methylation in ''Arabidopsis thaliana''.<br> | Gardening the genome: DNA methylation in ''Arabidopsis thaliana''.<br> | ||
[http://www.ncbi.nlm.nih.gov/pubmed/15861207 Nature Reviews Genetics 6, 351-360 (2005)] [review article] | [http://www.ncbi.nlm.nih.gov/pubmed/15861207 Nature Reviews Genetics 6, 351-360 (2005)] [review article] (* = equal contribution) | ||
(* = equal contribution) | |||
• Mockler, T.C., Chan, S., Sundaresan A., Chen, H., Jacobsen S.E. and Ecker, J.R.<br> | • Mockler, T.C., Chan, S., Sundaresan A., Chen, H., Jacobsen S.E. and Ecker, J.R.<br> | ||
Line 131: | Line 146: | ||
[http://www.ncbi.nlm.nih.gov/pubmed/12760039 Cold Spring Harbor Symposia on Quantitative Biology, 65, 253-263 (2000)]<br> | [http://www.ncbi.nlm.nih.gov/pubmed/12760039 Cold Spring Harbor Symposia on Quantitative Biology, 65, 253-263 (2000)]<br> | ||
|} | |} | ||
Latest revision as of 14:20, 18 July 2012
Chan Lab
Department of Plant Biology, UC Davis and HHMI
|
Links for UC Davis papers lead to the pdf file. • Talbert, P., 40 middle authors listed alphabetically including Chan, S.W.L., and Henikoff, S. • Wijnker, E.*, van Dun, K*, de Snoo, C.B., Lelivelt, C.L., Keurentjes, J.J., Naharudin, N.S., Ravi, M., Chan, S.W., de Jong, H. and Dirks, R. • Seymour, D.K., Filiault, D., Henry, I.M., Monson-Miller, J., Ravi, M., Pang, A., Comai, L., Chan, S.W. and Maloof, J.N. • Chan, S.W.L. • Ravi, M., Shibata, F., Ramahi, J.S., Nagaki, K., Chen, C., Murata, M. and Chan, S.W.L. • Marimuthu, M.P.A.*, Jolivet, S.*, Ravi, M.*, Pereira, L., Davda, J.N., Cromer, L., Wang, L., Nogué, F., Chan, S.W.L.#, Siddiqi, I.# and Mercier, R.# • Chan, S.W.L. • Ravi, M., Kwong, P.N., Menorca, R.M.G., Valencia, J.T., Ramahi, J.S., Stewart, J.L., Tran, R.K., Sundaresan, V., Comai, L. and Chan, S.W.L. • Ravi, M. and Chan, S.W.L. • Chan, S.W.L. • Henderson, I.R., Chan, S.R., Cao, X., Johnson, L. and Jacobsen, S.E. • Chan, S.W.L., Zhang, X.Y., Bernatavichute, Y.V. and Jacobsen, S.E. • Peng P., Chan, S.W.L., Shah, G.A. and Jacobsen, S.E. • Zhang, X.*, Yazaki, J.*, Sundaresan, A.*, Cokus, S.*, Chan, S.W.L., Chen, H., Henderson, I.R., Shinn, P., Pellegrini, M., Jacobsen, S.E., and Ecker, J.R. • Li, C.F., Pontes, O., El-Shami, M., Henderson, I.R., Bernatavichute, Y.V., Chan, S.W.L., Lagrange, T., Pikaard, C.S. and Jacobsen, S.E. • Chan, S.W.L., Henderson, I.R., Zhang, X.Y., Chien, J.S.C., Shah, G. and Jacobsen, S.E. • Chan, S.W.L.*, Henderson, I.R.* and Jacobsen, S.E. • Mockler, T.C., Chan, S., Sundaresan A., Chen, H., Jacobsen S.E. and Ecker, J.R. • Morris, K.V., Chan, S.W.L., Jacobsen, S.E. and Looney, D.J. • Chan, S.W.L., Zilberman D., Xie, Z., Johansen, L.K., Carrington, J.C. and Jacobsen, S.E. • Chan, S.R.W.L. and Blackburn, E.H. • Chan, S.W.L. and Blackburn, E.H. • Chan, S.W.L. and Blackburn, E.H. • Chan, S.W.L., Chang, J., Prescott, J. and Blackburn, E.H. • Blackburn, E.H., Chan, S., Chang, J., Fulton, T.B., Krauskopf, A., McEachern, M., Prescott, J., Roy, J., Smith, C. and Wang, H. |