Chan:Publications: Difference between revisions
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[http://www-plb.ucdavis.edu/ | [http://www-plb.ucdavis.edu/ Department of Plant Biology], [http://www.ucdavis.edu/ UC Davis] and [http://www.hhmi.org HHMI] | ||
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Links for UC Davis papers lead to the pdf file.<br> | |||
<br> | |||
• Melters, D.P., Paliulis L.V., Korf I.F. and Chan, S.W.L.<br> | |||
Holocentric chromosomes: convergent evolution, meiotic adaptations, and genomic analysis<br> | |||
[[:Image:2012 Daniel holocentric review Chromosome Research.pdf|Chromosome Research, published online (2012)]] [review article]<br> | |||
• Talbert, P., 40 middle authors listed alphabetically including Chan, S.W.L., and Henikoff, S.<br> | |||
A unified phylogeny-based nomenclature for histone variants<br> | |||
[[:Image:2012 Talbert nomenclature Epigenetics and Chromatin.pdf|Epigenetics and Chromatin, 5, 7 (2012)]] | |||
• Wijnker, E.*, van Dun, K*, de Snoo, C.B., Lelivelt, C.L., Keurentjes, J.J., Naharudin, N.S., Ravi, M., Chan, S.W., de Jong, H. and Dirks, R.<br> | |||
Reverse breeding in Arabidopsis generates homozygous parental lines from a heterozygous plant<br> | |||
[[:Image:2012 Erik reverse breeding Nature Genetics.pdf|Nature Genetics, 44, 467–470 (2012)]] (* equal contribution)<br> | |||
• Seymour, D.K., Filiault, D., Henry, I.M., Monson-Miller, J., Ravi, M., Pang, A., Comai, L., Chan, S.W. and Maloof, J.N.<br> | |||
Rapid creation of Arabidopsis doubled haploid lines for quantitative trait locus mapping<br> | |||
[[:Image:2012 Danelle DH for QTL PNAS.pdf|PNAS, 109, 4227-4232 (2012)]]<br> | |||
• Chan, S.W.L.<br> | |||
In a battle between parental chromosomes, a failure to reload<br> | |||
[[:Image:2011 Chan commentary PNAS.pdf|PNAS, 108, 13361-13362 (2011)]] [news and views article]<br> | |||
• Ravi, M., Shibata, F., Ramahi, J.S., Nagaki, K., Chen, C., Murata, M. and Chan, S.W.L.<br> | |||
Meiosis-specific loading of the centromere-specific histone CENH3 in ''Arabidopsis thaliana''<br> | |||
[[:Image:2011 Ravi meiosis PLoS Genetics.pdf|PLoS Genetics, 7, e1002121 (2011)]]<br> | |||
• Marimuthu, M.P.A.*, Jolivet, S.*, Ravi, M.*, Pereira, L., Davda, J.N., Cromer, L., Wang, L., Nogué, F., Chan, S.W.L.#, Siddiqi, I.# and Mercier, R.#<br> | |||
Synthetic clonal reproduction through seeds<br> | |||
[[:Image:2011 Marimuthu cloning Science.pdf|Science, 331, 876 (2011)]], also see the [[:Image:2011 Marimuthu cloning Science SOM.pdf|Supplementary Online Material]] (* equal contribution, # corresponding authors)<br> | |||
• Chan, S.W.L.<br> | |||
<br> | Chromosome engineering: power tools for plant genetics<br> | ||
[[:Image:2010 Chan chromosome engineering Trends Biotech.pdf|Trends in Biotechnology, 12, 605-10 (2010)]] [review article]<br> | |||
Ravi, M., Kwong, P.N., Menorca, R.M.G., Valencia, J.T., Ramahi, J.S., Stewart, J.L., Tran, R.K., Sundaresan, V., Comai, L. and Chan, S.W.L.<br> | • Ravi, M., Kwong, P.N., Menorca, R.M.G., Valencia, J.T., Ramahi, J.S., Stewart, J.L., Tran, R.K., Sundaresan, V., Comai, L. and Chan, S.W.L.<br> | ||
The rapidly evolving centromere-specific histone has stringent functional | The rapidly evolving centromere-specific histone has stringent functional requirements in ''Arabidopsis thaliana''<br> | ||
requirements in ''Arabidopsis thaliana''<br> | [[:Image:2010 Ravi cenh3 Genetics.pdf|Genetics, 186, 461–471 (2010)]]<br> | ||
Genetics, | |||
Ravi, M. and Chan, S.W.L.<br> | • Ravi, M. and Chan, S.W.L.<br> | ||
Haploid plants produced by centromere-mediated genome elimination<br> | Haploid plants produced by centromere-mediated genome elimination<br> | ||
Nature, 464, 615-618 (2010)<br> | [[:Image:2010 Ravi haploids Nature.pdf|Nature, 464, 615-618 (2010)]]<br> | ||
• Chan, S.W.L. <br> | |||
Chan, S.W.L. <br> | |||
Inputs and outputs for chromatin-targeted RNAi<br> | Inputs and outputs for chromatin-targeted RNAi<br> | ||
Trends in Plant Sciences 13, 383-9 (2008) [review article]<br> | [[:Image:2008 Chan RNAi review TiPS.pdf|Trends in Plant Sciences, 13, 383-9 (2008)]] [review article]<br> | ||
<br> | <br> | ||
<b>Before | <b>Before UC Davis:</b><br> | ||
<br> | <br> | ||
Chan, S.W.L., Zhang, X.Y., Bernatavichute, Y.V. and Jacobsen, S.E.<br> | • Greenberg, M.V.C., Ausin, I., Chan, S.W.L, Cokus, S.J., Cuperus, J.T., Feng, S., Law, J.A., Chu, C., Pellegrini, M., Carrington, J.C. and Jacobsen, S.E.<br> | ||
Identification of genes required for de novo DNA methylation in Arabidopsis<br> | |||
[http://www.ncbi.nlm.nih.gov/pubmed/21150311 Epigenetics, 6, 344-355 (2011)] | |||
• Henderson, I.R., Chan, S.R., Cao, X., Johnson, L. and Jacobsen, S.E.<br> | |||
Accurate sodium bisulfite sequencing in plants<br> | |||
[http://www.ncbi.nlm.nih.gov/pubmed/20081358 Epigenetics, 5, 47-49 (2010)] | |||
• Chan, S.W.L., Zhang, X.Y., Bernatavichute, Y.V. and Jacobsen, S.E.<br> | |||
Two-step recruitment of RNA-directed DNA methylation to tandem repeats.<br> | Two-step recruitment of RNA-directed DNA methylation to tandem repeats.<br> | ||
PLoS Biology 4 No. 11 e363 (2006) | [http://www.ncbi.nlm.nih.gov/pubmed/17105345 PLoS Biology 4 No. 11 e363 (2006)] | ||
Peng P., Chan, S.W.L., Shah, G.A. and Jacobsen, S.E.<br> | • Peng P., Chan, S.W.L., Shah, G.A. and Jacobsen, S.E.<br> | ||
Increased outcrossing in ''hothead'' mutants.<br> | Increased outcrossing in ''hothead'' mutants.<br> | ||
Nature 443, E8 (2006) | [http://www.ncbi.nlm.nih.gov/pubmed/17006468 Nature 443, E8 (2006)] | ||
Zhang, X.*, Yazaki, J.*, Sundaresan, A.*, Cokus, S.*, Chan, S.W.L., Chen, H., Henderson, I.R., Shinn, P., Pellegrini, M., Jacobsen, S.E., and Ecker, J.R.<br> | • Zhang, X.*, Yazaki, J.*, Sundaresan, A.*, Cokus, S.*, Chan, S.W.L., Chen, H., Henderson, I.R., Shinn, P., Pellegrini, M., Jacobsen, S.E., and Ecker, J.R.<br> | ||
Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in ''Arabidopsis''.<br> | Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in ''Arabidopsis''.<br> | ||
Cell 126, 1189-1201 (2006) | [http://www.ncbi.nlm.nih.gov/pubmed/16949657 Cell 126, 1189-1201 (2006)] (* equal contribution) | ||
Li, C.F., Pontes, O., El-Shami, M., Henderson, I.R., Bernatavichute, Y.V., Chan, S.W.L., Lagrange, T., Pikaard, C.S. and Jacobsen, S.E.<br> | • Li, C.F., Pontes, O., El-Shami, M., Henderson, I.R., Bernatavichute, Y.V., Chan, S.W.L., Lagrange, T., Pikaard, C.S. and Jacobsen, S.E.<br> | ||
An ARGONAUTE4-containing nuclear processing center co-localized with Cajal bodies in ''Arabidopsis thaliana''.<br> | An ARGONAUTE4-containing nuclear processing center co-localized with Cajal bodies in ''Arabidopsis thaliana''.<br> | ||
Cell 126, 93-106 (2006) | [http://www.ncbi.nlm.nih.gov/pubmed/16839879 Cell 126, 93-106 (2006)] | ||
Chan, S.W.L., Henderson, I.R., Zhang, X.Y., Chien, J.S.C., Shah, G. and Jacobsen, S.E.<br> | • Chan, S.W.L., Henderson, I.R., Zhang, X.Y., Chien, J.S.C., Shah, G. and Jacobsen, S.E.<br> | ||
RNAi, DRD1 and Histone Methylation Actively Target Developmentally Important Non-CG DNA Methylation in ''Arabidopsis''.<br> | RNAi, DRD1 and Histone Methylation Actively Target Developmentally Important Non-CG DNA Methylation in ''Arabidopsis''.<br> | ||
PLoS Genetics 2, No. 6 e83 (2006) | [http://www.ncbi.nlm.nih.gov/pubmed/16741558 PLoS Genetics 2, No. 6 e83 (2006)] | ||
Chan, S.W.L.*, Henderson, I.R.* and Jacobsen, S.E.<br> | • Chan, S.W.L.*, Henderson, I.R.* and Jacobsen, S.E.<br> | ||
Gardening the genome: DNA methylation in ''Arabidopsis thaliana''.<br> | Gardening the genome: DNA methylation in ''Arabidopsis thaliana''.<br> | ||
Nature Reviews Genetics 6, 351-360 (2005) [review article] | [http://www.ncbi.nlm.nih.gov/pubmed/15861207 Nature Reviews Genetics 6, 351-360 (2005)] [review article] (* = equal contribution) | ||
Mockler, T.C., Chan, S., Sundaresan A., Chen, H., Jacobsen S.E. and Ecker, J.R.<br> | • Mockler, T.C., Chan, S., Sundaresan A., Chen, H., Jacobsen S.E. and Ecker, J.R.<br> | ||
Applications of DNA tiling arrays for whole-genome analysis.<br> | Applications of DNA tiling arrays for whole-genome analysis.<br> | ||
Genomics 85, 1-15 (2005) [review article] | [http://www.ncbi.nlm.nih.gov/pubmed/15607417 Genomics 85, 1-15 (2005)] [review article] | ||
Morris, K.V., Chan, S.W.L., Jacobsen, S.E. and Looney, D.J.<br> | • Morris, K.V., Chan, S.W.L., Jacobsen, S.E. and Looney, D.J.<br> | ||
siRNA-induced transcriptional gene silencing in human cells.<br> | siRNA-induced transcriptional gene silencing in human cells.<br> | ||
Science 305, 1289-1292 (2004) | [http://www.ncbi.nlm.nih.gov/pubmed/15297624 Science 305, 1289-1292 (2004)] | ||
Chan, S.W.L., Zilberman D., Xie, Z., Johansen, L.K., Carrington, J.C. and Jacobsen, S.E.<br> | • Chan, S.W.L., Zilberman D., Xie, Z., Johansen, L.K., Carrington, J.C. and Jacobsen, S.E.<br> | ||
RNA silencing genes control de novo DNA methylation.<br> | RNA silencing genes control de novo DNA methylation.<br> | ||
Science 303, 1336 (2004) | [http://www.ncbi.nlm.nih.gov/pubmed/14988555 Science 303, 1336 (2004)] | ||
Chan, S.R.W.L. and Blackburn, E.H.<br> | • Chan, S.R.W.L. and Blackburn, E.H.<br> | ||
Telomeres and telomerase.<br> | Telomeres and telomerase.<br> | ||
Phil. Trans. R. Soc. Lond. B 359, 109-121 (2004) | [http://www.ncbi.nlm.nih.gov/pubmed/15065663 Phil. Trans. R. Soc. Lond. B 359, 109-121 (2004)] | ||
Chan, S.W.L. and Blackburn, E.H.<br> | • Chan, S.W.L. and Blackburn, E.H.<br> | ||
Telomerase and ATM/Tel1p protect telomeres from non-homologous end-joining.<br> | Telomerase and ATM/Tel1p protect telomeres from non-homologous end-joining.<br> | ||
Molecular Cell 11, 1379-1387 (2003) | [http://www.ncbi.nlm.nih.gov/pubmed/12769860 Molecular Cell 11, 1379-1387 (2003)] | ||
Chan, S.W.L. and Blackburn, E.H.<br> | • Chan, S.W.L. and Blackburn, E.H.<br> | ||
New ways not to make ends meet: telomerase, DNA damage proteins and heterochromatin.<br> | New ways not to make ends meet: telomerase, DNA damage proteins and heterochromatin.<br> | ||
Oncogene 21, 553-563 (2002) [review article] | [http://www.ncbi.nlm.nih.gov/pubmed/11850780 Oncogene 21, 553-563 (2002)] [review article] | ||
Chan, S.W.L., Chang, J., Prescott, J. and Blackburn, E.H.<br> | • Chan, S.W.L., Chang, J., Prescott, J. and Blackburn, E.H.<br> | ||
Altering telomere structure allows telomerase to act in yeast lacking ATM kinases.<br> | Altering telomere structure allows telomerase to act in yeast lacking ATM kinases.<br> | ||
Current Biology 11, 1240-1250 (2001) | [http://www.ncbi.nlm.nih.gov/pubmed/11525738 Current Biology 11, 1240-1250 (2001)] | ||
Blackburn, E.H., Chan, S., Chang, J., Fulton, T.B., Krauskopf, A., McEachern, M., Prescott, J., Roy, J., Smith, C. and Wang, H.<br> | • Blackburn, E.H., Chan, S., Chang, J., Fulton, T.B., Krauskopf, A., McEachern, M., Prescott, J., Roy, J., Smith, C. and Wang, H.<br> | ||
Molecular manifestations and molecular determinants of telomere capping.<br> | Molecular manifestations and molecular determinants of telomere capping.<br> | ||
Cold Spring Harbor Symposia on Quantitative Biology, 65, 253-263 (2000)<br> | [http://www.ncbi.nlm.nih.gov/pubmed/12760039 Cold Spring Harbor Symposia on Quantitative Biology, 65, 253-263 (2000)]<br> | ||
|} | |} |
Latest revision as of 14:20, 18 July 2012
Chan Lab
Department of Plant Biology, UC Davis and HHMI
|
Links for UC Davis papers lead to the pdf file. • Talbert, P., 40 middle authors listed alphabetically including Chan, S.W.L., and Henikoff, S. • Wijnker, E.*, van Dun, K*, de Snoo, C.B., Lelivelt, C.L., Keurentjes, J.J., Naharudin, N.S., Ravi, M., Chan, S.W., de Jong, H. and Dirks, R. • Seymour, D.K., Filiault, D., Henry, I.M., Monson-Miller, J., Ravi, M., Pang, A., Comai, L., Chan, S.W. and Maloof, J.N. • Chan, S.W.L. • Ravi, M., Shibata, F., Ramahi, J.S., Nagaki, K., Chen, C., Murata, M. and Chan, S.W.L. • Marimuthu, M.P.A.*, Jolivet, S.*, Ravi, M.*, Pereira, L., Davda, J.N., Cromer, L., Wang, L., Nogué, F., Chan, S.W.L.#, Siddiqi, I.# and Mercier, R.# • Chan, S.W.L. • Ravi, M., Kwong, P.N., Menorca, R.M.G., Valencia, J.T., Ramahi, J.S., Stewart, J.L., Tran, R.K., Sundaresan, V., Comai, L. and Chan, S.W.L. • Ravi, M. and Chan, S.W.L. • Chan, S.W.L. • Henderson, I.R., Chan, S.R., Cao, X., Johnson, L. and Jacobsen, S.E. • Chan, S.W.L., Zhang, X.Y., Bernatavichute, Y.V. and Jacobsen, S.E. • Peng P., Chan, S.W.L., Shah, G.A. and Jacobsen, S.E. • Zhang, X.*, Yazaki, J.*, Sundaresan, A.*, Cokus, S.*, Chan, S.W.L., Chen, H., Henderson, I.R., Shinn, P., Pellegrini, M., Jacobsen, S.E., and Ecker, J.R. • Li, C.F., Pontes, O., El-Shami, M., Henderson, I.R., Bernatavichute, Y.V., Chan, S.W.L., Lagrange, T., Pikaard, C.S. and Jacobsen, S.E. • Chan, S.W.L., Henderson, I.R., Zhang, X.Y., Chien, J.S.C., Shah, G. and Jacobsen, S.E. • Chan, S.W.L.*, Henderson, I.R.* and Jacobsen, S.E. • Mockler, T.C., Chan, S., Sundaresan A., Chen, H., Jacobsen S.E. and Ecker, J.R. • Morris, K.V., Chan, S.W.L., Jacobsen, S.E. and Looney, D.J. • Chan, S.W.L., Zilberman D., Xie, Z., Johansen, L.K., Carrington, J.C. and Jacobsen, S.E. • Chan, S.R.W.L. and Blackburn, E.H. • Chan, S.W.L. and Blackburn, E.H. • Chan, S.W.L. and Blackburn, E.H. • Chan, S.W.L., Chang, J., Prescott, J. and Blackburn, E.H. • Blackburn, E.H., Chan, S., Chang, J., Fulton, T.B., Krauskopf, A., McEachern, M., Prescott, J., Roy, J., Smith, C. and Wang, H. |