Difference between revisions of "CH391L/S13/Assignments"

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m (Topic Updates)
(For Monday, February 11th, 2013)
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= For Monday, February 11th, 2013 =
 
= For Monday, February 11th, 2013 =
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=== Topic Updates ===
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* CAD for Synthetic Biology (Kevin)
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* Chris Yellman and Randy Hughes will discuss the paper for  [[CH391L/S13/DnaAssembly | DNA Assembly: From Genes to Genomes]]<cite>Gibson2008</cite>
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===Papers for Discussion===
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<biblio>
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#Gibson2008 pmid=18218864
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</biblio>
  
 
=== New Topics ===
 
=== New Topics ===
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* Minimal / "clean" genomes (Evan)
 
* Ancestral sequence reconstruction (Aurko)
 
* Ancestral sequence reconstruction (Aurko)
 
* Directed protein evolution (Max)
 
* Directed protein evolution (Max)

Revision as of 15:14, 4 February 2013


For Monday, January 28th, 2013

New Topics:

For Monday, February 4th, 2013

Topic Updates

Papers for Discussion

  1. Playing God in Frankenstein's Footsteps: Synthetic Biology and the Meaning of Life [ethics]
    For Bioethics
  2. Outlaw, hackers, victorian amateurs: diagnosing public participation in the life sciences today pdf [Kelty2010]
    For DIY Biology
  3. Kelly JR, Rubin AJ, Davis JH, Ajo-Franklin CM, Cumbers J, Czar MJ, de Mora K, Glieberman AL, Monie DD, and Endy D. Measuring the activity of BioBrick promoters using an in vivo reference standard. J Biol Eng. 2009 Mar 20;3:4. DOI:10.1186/1754-1611-3-4 | PubMed ID:19298678 | HubMed [Endy2009]
    For BioBricks

New Topics

For Monday, February 11th, 2013

Topic Updates

Papers for Discussion

  1. Gibson DG, Benders GA, Andrews-Pfannkoch C, Denisova EA, Baden-Tillson H, Zaveri J, Stockwell TB, Brownley A, Thomas DW, Algire MA, Merryman C, Young L, Noskov VN, Glass JI, Venter JC, Hutchison CA 3rd, and Smith HO. Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome. Science. 2008 Feb 29;319(5867):1215-20. DOI:10.1126/science.1151721 | PubMed ID:18218864 | HubMed [Gibson2008]

New Topics

For Monday, February 18th, 2013

New Topics

  • Biocontainment (Thomas)
  • Bioprospecting / Metagenomics (Andre)
  • New Marker Genes (Ben)

For Monday, February 25th, 2013

New Topics

  • Optogenetics (Sid)
  • TBD (Larry)
  • Riboswitches (Kate)

For Monday, March 4th, 2013

  • TBD (Jeremy)
  • Biological material assembly and patterning - Belcher virus work (Marco)