Biomod/2011/Caltech/DeoxyriboNucleicAwesome/References: Difference between revisions
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==Referenced Papers== | ==Referenced Papers== | ||
:''Alphabetical by First Author'' | :''Alphabetical by First Author'' | ||
===A=== | |||
*Ahmed El-Shehawy (1992). On absorption probabilities for a random walk between two different barriers. ''Annals De La Faculte Des Sciences De Toulouse, 1''(1), 95-103. | |||
*Alessandro Blasi (1976). On a Random Walk Between a Reflecting and an Absorbing Barrier. ''The Annals of Probability, 4''(4), 695-696. | |||
===B=== | ===B=== | ||
*Baker, B. A., & Milam, V. T. . (2011). Hybridization kinetics between immobilized double-stranded DNA probes and targets containing empedded recognition segments. ''Nucleic Acids Research,'' 1-13. | *Baker, B. A., & Milam, V. T. . (2011). Hybridization kinetics between immobilized double-stranded DNA probes and targets containing empedded recognition segments. ''Nucleic Acids Research,'' 1-13. | ||
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*Dirks, R. M. , Lin, M., Winfree, E., & Pierce, N. A. (2004). Sensitive fluorescence-based thermodynamic and kinetic measurements of DNA hybridization in solutions. ''Nucleic Acids Research, 32''(4), 1392-1403. | *Dirks, R. M. , Lin, M., Winfree, E., & Pierce, N. A. (2004). Sensitive fluorescence-based thermodynamic and kinetic measurements of DNA hybridization in solutions. ''Nucleic Acids Research, 32''(4), 1392-1403. | ||
===F=== | ===F=== | ||
*Feller, W. (1971). ''An introduction to probability theory and its applications''. | |||
*Fujibayashi, K., Hariadi, R., Park, S. H., Winfree, E., & Murata, S. (2007). Toward relaible algorithmic self-assembly of DNA tiles: a fixed-width cellular automaton pattern. ''Nano Letters, 8''(7), 1791-1797. | *Fujibayashi, K., Hariadi, R., Park, S. H., Winfree, E., & Murata, S. (2007). Toward relaible algorithmic self-assembly of DNA tiles: a fixed-width cellular automaton pattern. ''Nano Letters, 8''(7), 1791-1797. | ||
===G=== | ===G=== | ||
*Gu, H. , Chao, J., Xiao, S., & Seeman, N. C. (2010). A proximity-based programmable DNA nanoscale assembly line. ''Nature, 465,'' 202-205. | *Gu, H. , Chao, J., Xiao, S., & Seeman, N. C. (2010). A proximity-based programmable DNA nanoscale assembly line. ''Nature, 465,'' 202-205. | ||
===H=== | |||
*Hardin, J. C., & Sweet, A. L. (1969). A Note on Absorption Probabilities for a Random Walk between a Reflecting and an Absorbing Barrier. ''Journal of Applied Probability, 6''(1), 224-226. | |||
===L=== | |||
*Lund, K., Manzo, A. J., Dabby, N., Michelotti, N., Johnson-Buck, A., & Nangreave, J., et al. (2010). Molecular robots guided by prescriptive landscapes. ''Nature, 465''(7295), 206-210. | |||
===M=== | ===M=== | ||
*Morrison, L. E. , & Stols, L. M. . (1993). Sensitive fluorescence-based thermodynamic and kinetic measurements of DNA hybridization in solutions. ''Biochemestry, 32,'' 3095-3104. | *Morrison, L. E. , & Stols, L. M. . (1993). Sensitive fluorescence-based thermodynamic and kinetic measurements of DNA hybridization in solutions. ''Biochemestry, 32,'' 3095-3104. | ||
*Muscat, R. A. , Bath, J., & Tuberfield, A. J. (2011). A programmable molecular robot. ''Nano Letters, 11,'' 982-987. | *Muscat, R. A. , Bath, J., & Tuberfield, A. J. (2011). A programmable molecular robot. ''Nano Letters, 11,'' 982-987. | ||
===N=== | |||
*Netus, M. (1963). Absorption probabilities for a random walk between a reflecting and an absorbing barrier. ''Bull. Soc. Math. Belgique, 15'', 253-258. | |||
===P=== | |||
*Penchovsky, R., & Breaker, R. R. (2005). Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes. ''Nature Biotechnology, 23''(11), 1424-1433. | |||
===Q=== | |||
*Qian, L., & Winfree, E. (2011). Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades. ''Science, 332''(6034), 1196. | |||
===R=== | |||
*Rothemund, P. W. K. (2006). Folding DNA to create nanoscale shapes and patterns. ''Nature, 440''(7082), 297-302. | |||
===S=== | ===S=== | ||
*SantaLucia, J. (1998). A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. ''PNAS, 95,'' 1460-1465. | *SantaLucia, J. (1998). A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. ''PNAS, 95,'' 1460-1465. | ||
*Seelig, G., Soloveichik, D., Zhang, D. Y., & Winfree, E. (2006). Enzyme-free nucleic acid logic circuits. ''Science, 314''(5805), 1585-1588. | |||
*Seeman, N. C., & Kallenbach, N. R. (1983). Design of immobile nucleic acid junctions. ''Biophysical Journal, 44''(2), 201-209. | |||
===V=== | ===V=== | ||
*Venkataraman, S., Dirks, R. M, Rothemund, P. W. K., Winfree, E., & Pierce, N. A. (2007). An autonomous polymerization motor powered by DNA hybridization. ''Nature Nanotechnology,'' 1-5. | *Venkataraman, S., Dirks, R. M, Rothemund, P. W. K., Winfree, E., & Pierce, N. A. (2007). An autonomous polymerization motor powered by DNA hybridization. ''Nature Nanotechnology,'' 1-5. | ||
===W=== | ===W=== | ||
*Wang, Z., Elbaz, J., Remacle, F., Levine, R. D., & Willner, I. (2010). All-DNA finite-state automata with finite memory. ''PNAS, 107''(51), 21996-22001. | *Wang, Z., Elbaz, J., Remacle, F., Levine, R. D., & Willner, I. (2010). All-DNA finite-state automata with finite memory. ''PNAS, 107''(51), 21996-22001. | ||
*Weesakul, B. (1961). The random walk between a reflecting and an absorbing barrier. ''The Annals of Mathematical Statistics, 32''(3), 765-765. | |||
*Wetmur, J. G. (1991). DNA probes: applications of the principles of nucleic acid hybridization. ''Critical Reviews in Biochemistry and Molecular Biology, 26''(3/4), 227-259. | *Wetmur, J. G. (1991). DNA probes: applications of the principles of nucleic acid hybridization. ''Critical Reviews in Biochemistry and Molecular Biology, 26''(3/4), 227-259. | ||
*Wickham, S. F. J., Endo, M., Katsuda, Y., Hidaka, K., Bath, J., Sugiyama, H., & Tuberfield, A. J. (2010). Direct observation of stepwise movement of a synthetic molecular transporter. ''Nature Nanotechnology, 6,'' 166–169. | *Wickham, S. F. J., Endo, M., Katsuda, Y., Hidaka, K., Bath, J., Sugiyama, H., & Tuberfield, A. J. (2010). Direct observation of stepwise movement of a synthetic molecular transporter. ''Nature Nanotechnology, 6,'' 166–169. | ||
*Winfree, E., Liu, F., Wenzler, L. A., & Seeman, N. C. (1998). Design and self-assembly of two-dimensional DNA crystals.'' Nature, 394''(6693), 539-544. | |||
===Z=== | ===Z=== | ||
*Zadeh, J. N., Steenberg, C. D., Bois, J. S., Wolfe, B. R., Pierce, M. B., & Khan, A. R., et al. (2011). NUPACK Analysis and design of nucleic acid systems. ''Journal of Computational Chemistry, 32''(1), 170-173. | |||
*Zhang, D. Y., & Winfree, E. (2009). Control of DNA strand displacement kinetics using toehold exchange. ''JACS, 131,'' 17303-17314. | *Zhang, D. Y., & Winfree, E. (2009). Control of DNA strand displacement kinetics using toehold exchange. ''JACS, 131,'' 17303-17314. | ||
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==Useful Links== | ==Useful Links== | ||
*[[Biomod/2011/Caltech/DeoxyriboNucleicAwesome/Format|DeoxyriboNucleicAwesome Wiki Page Format Guide]] | |||
*[http://en.wikipedia.org/wiki/Wikipedia:Cheatsheet Wiki Editing Cheatsheet] | *[http://en.wikipedia.org/wiki/Wikipedia:Cheatsheet Wiki Editing Cheatsheet] | ||
*[http://en.wikipedia.org/wiki/Help:Contents Wiki Help Navigator] | *[http://en.wikipedia.org/wiki/Help:Contents Wiki Help Navigator] |
Latest revision as of 04:43, 2 October 2011
Friday, April 19, 2024
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ReferencesReferenced Papers
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