Difference between revisions of "BioNumbers data base"

From OpenWetWare
Jump to: navigation, search
Line 1: Line 1:
 
 
<exhibit>
 
<exhibit>
 
   <source id="bionumbers"  
 
   <source id="bionumbers"  
           columns="label, propfamily, propsubfamily, property, organism, value, units, reference, primaryref, keywords, method, range, comments, enteredby"  
+
           columns="label,propfamily,propsubfamily,property,organism,value,units,reference,primaryref,keywords,method,range,comments,enteredby"  
 
           type="Number" label="Number" pluralLabel="Numbers"  
 
           type="Number" label="Number" pluralLabel="Numbers"  
 
           />
 
           />
Line 12: Line 11:
 
   <view viewClass="Tabular"
 
   <view viewClass="Tabular"
 
         label="Table"
 
         label="Table"
         columns=".propfamily, .propsubfamily, .property, .organism, .value, .units"
+
         columns=".propfamily,.propsubfamily,.property,.organism,.value,.units"
 
         sortColumn="0"
 
         sortColumn="0"
 
         />
 
         />
 
</exhibit>
 
</exhibit>
  
{|id=bionumbers
+
{| id=bionumbers border=1
 
|-
 
|-
!property index!!Property family!!Property subfamily!!Property!!Organism!!Value!!Units!!Reference (where data was taken from)!!Primary source of reference (if different from previous)!!Keywords!!measurement method!!Standard deviation or range if available!!"comments (cell type, measurement conditions etc.)"!!Entered by:
+
!property index
!
+
!Property family
!
+
!Property subfamily
!
+
!Property
!
+
!Organism
!
+
!Value
 +
!Units
 +
!Reference (where data was taken from)
 +
!Primary source of reference (if different from previous)
 +
!Keywords
 +
!measurement method
 +
!Standard deviation or range if available
 +
!comments (cell type, measurement conditions etc.)
 +
!Entered by:
 
|-
 
|-
 
|1
 
|1
Line 33: Line 40:
 
|2
 
|2
 
|microns
 
|microns
|"http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi Shan Sundararaj, Anchi Guo, Bahram Habibi-Nazhad, Melania Rouani,Paul Stothard, Michael Ellison,and David S. Wishart ""The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli"" Nucleic Acids Res. 2004 January 1; 32 (Database issue): D293.D295"
+
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi Shan Sundararaj, Anchi Guo, Bahram Habibi-Nazhad, Melania Rouani,Paul Stothard, Michael Ellison,and David S. Wishart "The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli" Nucleic Acids Res. 2004 January 1; 32 (Database issue): D293.D295
 
|A list of primary sources is given in the reference
 
|A list of primary sources is given in the reference
 
|
 
|
Line 39: Line 46:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|Major other databases of interest:
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|2
 
|2
Line 64: Line 61:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|3
 
|3
Line 89: Line 76:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|"Genome sizes, number of chromosomes"
 
|http://www.genomesize.com
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|4
 
|4
Line 108: Line 85:
 
|0.44-1.79*10^-18
 
|0.44-1.79*10^-18
 
|m^3
 
|m^3
|"Determination of bacterial cell volume with the Coulter Counter. HE Kubitschek, JA Friske - Journal of Bacteriology, 1986, p. 1466-1467"
+
|Determination of bacterial cell volume with the Coulter Counter. HE Kubitschek, JA Friske - Journal of Bacteriology, 1986, p. 1466-1467
 
|
 
|
 
|
 
|
 
|Coulter counter
 
|Coulter counter
 
|
 
|
|"value depends on medium and growth rate, see ref."
+
|value depends on medium and growth rate, see ref.
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|"Genome sizes, number of chromosomes"
 
|http://www.genomesize.com
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|5
 
|5
Line 139: Line 106:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|6
 
|6
Line 164: Line 121:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|7
 
|7
Line 189: Line 136:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|8
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|8
 
 
|Sizes
 
|Sizes
 
|Weights
 
|Weights
Line 214: Line 151:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|9
 
|9
Line 233: Line 160:
 
|6.4x10-16
 
|6.4x10-16
 
|kg
 
|kg
|"Bremer, H., Dennis, P. P. (1996) Modulation of chemical composition and other parameters of the cell by growth rate. Neidhardt, et al. eds. Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, 2nd ed. chapter 97, Table 2"
+
|Bremer, H., Dennis, P. P. (1996) Modulation of chemical composition and other parameters of the cell by growth rate. Neidhardt, et al. eds. Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, 2nd ed. chapter 97, Table 2
 
|
 
|
 
|
 
|
Line 240: Line 167:
 
|calculated based on data at 30 minutes cell division time. For other division times see reference.
 
|calculated based on data at 30 minutes cell division time. For other division times see reference.
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|10
 
|10
Line 264: Line 181:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|11
 
|11
Line 289: Line 196:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|12
 
|12
Line 314: Line 211:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|13
|
+
|Sizes
|
+
|Volumes
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|13
 
|Sizes
 
|Volumes
 
 
|Nuclear (DNA+protein) volume
 
|Nuclear (DNA+protein) volume
 
|E. coli
 
|E. coli
Line 339: Line 226:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|14
 
|14
Line 364: Line 241:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|15
 
|15
Line 389: Line 256:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|16
 
|16
Line 414: Line 271:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|17
 
|17
Line 439: Line 286:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|18
|
+
|Sizes
|
+
|Lengths
|
+
|Average diameter of ave. protein
|
 
|
 
|
 
|
 
|
 
|-
 
|18
 
|Sizes
 
|Lengths
 
|Average diameter of ave. protein
 
 
|E. coli
 
|E. coli
 
|5
 
|5
Line 464: Line 301:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|19
 
|19
Line 489: Line 316:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|20
 
|20
Line 514: Line 331:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|21
 
|21
Line 539: Line 346:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|22
 
|22
Line 564: Line 361:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|23
|
+
|Sizes
|
+
|mRNA
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|23
 
|Sizes
 
|mRNA
 
 
|Average length of mRNA
 
|Average length of mRNA
 
|E. coli
 
|E. coli
Line 589: Line 376:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|24
 
|24
Line 614: Line 391:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|25
 
|25
Line 639: Line 406:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|26
 
|26
Line 664: Line 421:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|27
 
|27
Line 689: Line 436:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|28
|
+
|Sizes
|
+
|Lengths
|
+
|Diameter of chromosome
|
 
|
 
|
 
|
 
|
 
|-
 
|28
 
|Sizes
 
|Lengths
 
|Diameter of chromosome
 
 
|E. coli
 
|E. coli
 
|490 um
 
|490 um
Line 714: Line 451:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|29
 
|29
Line 739: Line 466:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|30
 
|30
Line 764: Line 481:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|31
 
|31
Line 789: Line 496:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|32
 
|32
Line 814: Line 511:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|33
|
+
|Sizes
|
+
|Lengths
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|33
 
|Sizes
 
|Lengths
 
 
|Spacing between protein entities
 
|Spacing between protein entities
 
|E. coli
 
|E. coli
Line 839: Line 526:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|34
 
|34
Line 864: Line 541:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|35
 
|35
Line 889: Line 556:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|36
 
|36
Line 914: Line 571:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|37
 
|37
Line 939: Line 586:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|38
|
+
|General Statistics
|
+
|Velocities
|
+
|Mean Velocity of small molecules (cytoplasm)
|
 
|
 
|
 
|
 
|
 
|-
 
|38
 
|General Statistics
 
|Velocities
 
|Mean Velocity of small molecules (cytoplasm)
 
 
|E. coli
 
|E. coli
 
|50 nm/ms = 5x10-5 m/s
 
|50 nm/ms = 5x10-5 m/s
Line 964: Line 601:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|39
 
|39
Line 989: Line 616:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|40
 
|40
Line 1,014: Line 631:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|41
 
|41
Line 1,039: Line 646:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|42
 
|42
Line 1,064: Line 661:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|43
|
+
|General Statistics
|
+
|Concentrations
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|43
 
|General Statistics
 
|Concentrations
 
 
|Concentration of DNA in cell
 
|Concentration of DNA in cell
 
|E. coli
 
|E. coli
Line 1,089: Line 676:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|44
 
|44
Line 1,106: Line 683:
 
|Volume occupied by water
 
|Volume occupied by water
 
|E. coli
 
|E. coli
|70.%
+
|0.7
 
|Percent
 
|Percent
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 1,114: Line 691:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|45
 
|45
Line 1,131: Line 698:
 
|Volume occupied by protein
 
|Volume occupied by protein
 
|E. coli
 
|E. coli
|17.%
+
|0.17
 
|Percent
 
|Percent
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 1,139: Line 706:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|46
 
|46
Line 1,156: Line 713:
 
|Volume occupied by all RNA
 
|Volume occupied by all RNA
 
|E. coli
 
|E. coli
|6.%
+
|0.06
 
|Percent
 
|Percent
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 1,164: Line 721:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|47
 
|47
Line 1,181: Line 728:
 
|Volume occupied by rRNA
 
|Volume occupied by rRNA
 
|E. coli
 
|E. coli
|5.%
+
|0.05
 
|Percent
 
|Percent
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 1,189: Line 736:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|48
|
+
|General Statistics
|
+
|Volumes
|
+
|Volume occupied by tRNA
|
+
|E. coli
|
+
|0.008
|
+
|Percent
|
+
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
|
+
|A list of primary sources is given in the reference
|-
 
|48
 
|General Statistics
 
|Volumes
 
|Volume occupied by tRNA
 
|E. coli
 
|0.8%
 
|Percent
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|A list of primary sources is given in the reference
 
|
 
|
 
|
 
|
 
|"Ron Milo, Paul Jorgensen, Mike Springer"
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 +
|Ron Milo, Paul Jorgensen, Mike Springer
 
|-
 
|-
 
|49
 
|49
Line 1,231: Line 758:
 
|Volume occupied by mRNA
 
|Volume occupied by mRNA
 
|E. coli
 
|E. coli
|0.2%
+
|0.002
 
|Percent
 
|Percent
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 1,239: Line 766:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|50
 
|50
Line 1,256: Line 773:
 
|Volume occupied by DNA
 
|Volume occupied by DNA
 
|E. coli
 
|E. coli
|1.%
+
|0.01
 
|Percent
 
|Percent
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 1,264: Line 781:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|51
 
|51
Line 1,281: Line 788:
 
|Volume occupied by ribosomes
 
|Volume occupied by ribosomes
 
|E. coli
 
|E. coli
|8.%
+
|0.08
 
|Percent
 
|Percent
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 1,289: Line 796:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|52
 
|52
Line 1,306: Line 803:
 
|Volume occupied by lipid
 
|Volume occupied by lipid
 
|E. coli
 
|E. coli
|3.%
+
|0.03
 
|Percent
 
|Percent
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 1,314: Line 811:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|53
 
|53
Line 1,331: Line 818:
 
|Volume occupied by LPS
 
|Volume occupied by LPS
 
|E. coli
 
|E. coli
|1.%
+
|0.01
 
|Percent
 
|Percent
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 1,339: Line 826:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|54
 
|54
Line 1,356: Line 833:
 
|Volume occupied by murein
 
|Volume occupied by murein
 
|E. coli
 
|E. coli
|1.%
+
|0.01
 
|Percent
 
|Percent
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 1,364: Line 841:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|55
 
|55
Line 1,381: Line 848:
 
|Volume occupied by glycogen
 
|Volume occupied by glycogen
 
|E. coli
 
|E. coli
|1.%
+
|0.01
 
|Percent
 
|Percent
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 1,389: Line 856:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|56
 
|56
Line 1,406: Line 863:
 
|Volume occupied by ions
 
|Volume occupied by ions
 
|E. coli
 
|E. coli
|0.3%
+
|0.003
 
|Percent
 
|Percent
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 1,414: Line 871:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|57
 
|57
Line 1,431: Line 878:
 
|Volume occupied by small organics
 
|Volume occupied by small organics
 
|E. coli
 
|E. coli
|1.%
+
|0.01
 
|Percent
 
|Percent
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 1,439: Line 886:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|58
|
+
|General Statistics
|
+
|Rates
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|58
 
|General Statistics
 
|Rates
 
 
|Translation rate
 
|Translation rate
 
|E. coli
 
|E. coli
Line 1,464: Line 901:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|59
 
|59
Line 1,483: Line 910:
 
|20
 
|20
 
|aa/sec
 
|aa/sec
|"Bremer, H., Dennis, P. P. (1996) Modulation of chemical composition and other parameters of the cell by growth rate. Neidhardt, et al. eds. Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, 2nd ed. chapter 97, Table 3"
+
|Bremer, H., Dennis, P. P. (1996) Modulation of chemical composition and other parameters of the cell by growth rate. Neidhardt, et al. eds. Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, 2nd ed. chapter 97, Table 3
|"Dennis, P. P., and H. Bremer. 1974. Differential rate of ribosomal protein synthesis in Escherichia coli B/r. J. Mol. Biol. 84:407-422.;Dennis, P. P., and M. Nomura. 1974. Stringent control of ribosomal protein gene expression in
+
|Dennis, P. P., and H. Bremer. 1974. Differential rate of ribosomal protein synthesis in Escherichia coli B/r. J. Mol. Biol. 84:407-422.;Dennis, P. P., and M. Nomura. 1974. Stringent control of ribosomal protein gene expression in Escherichia coli. Proc. Natl. Acad. Sci. USA 71:3819-3823.
|
 
|
 
 
|
 
|
|
+
|Indirect calculation based on the number of ribosomes, ribosome activity fraction and protein synthesis rate
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|Escherichia coli. Proc. Natl. Acad. Sci. USA 71:3819-3823."
 
|
 
|"Indirect calculation based on the number of ribosomes, ribosome activity fraction and protein synthesis rate"
 
 
|
 
|
 
|calculated based on data at 30 minutes cell division time. For other division times see reference. This value is probably an underestimate based on some newer results
 
|calculated based on data at 30 minutes cell division time. For other division times see reference. This value is probably an underestimate based on some newer results
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|60
 
|60
Line 1,539: Line 931:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|61
|
+
|Copy numbers
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|61
 
|Copy numbers
 
 
|Large Molecule Copy Numbers
 
|Large Molecule Copy Numbers
 
|Number of cell walls/cell
 
|Number of cell walls/cell
Line 1,564: Line 946:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|62
 
|62
Line 1,589: Line 961:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|63
 
|63
Line 1,614: Line 976:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|64
 
|64
Line 1,639: Line 991:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|65
 
|65
Line 1,664: Line 1,006:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|66
|
+
|Copy numbers
|
+
|Large Molecule Copy Numbers
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|66
 
|Copy numbers
 
|Large Molecule Copy Numbers
 
 
|Number of tRNA/cell
 
|Number of tRNA/cell
 
|E. coli
 
|E. coli
Line 1,689: Line 1,021:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|67
 
|67
Line 1,714: Line 1,036:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|68
 
|68
Line 1,739: Line 1,051:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|69
 
|69
Line 1,756: Line 1,058:
 
|Number of murein molecules/cell
 
|Number of murein molecules/cell
 
|E. coli
 
|E. coli
|"240,000-700,000"
+
|240,000-700,000
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 1,764: Line 1,066:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|70
 
|70
Line 1,789: Line 1,081:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|71
|
+
|Copy numbers
|
+
|Large Molecule Copy Numbers
|
+
|Number of lipids/cell
|
 
|
 
|
 
|
 
|
 
|-
 
|71
 
|Copy numbers
 
|Large Molecule Copy Numbers
 
|Number of lipids/cell
 
 
|E. coli
 
|E. coli
 
|25000000
 
|25000000
Line 1,814: Line 1,096:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|72
 
|72
Line 1,839: Line 1,111:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|73
 
|73
Line 1,864: Line 1,126:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|74
 
|74
Line 1,889: Line 1,141:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|75
 
|75
Line 1,914: Line 1,156:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|76
|
+
|Copy numbers
|
+
|Large Molecule Copy Numbers
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|76
 
|Copy numbers
 
|Large Molecule Copy Numbers
 
 
|Number of phosphatidylserine
 
|Number of phosphatidylserine
 
|E. coli
 
|E. coli
Line 1,939: Line 1,171:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|77
 
|77
Line 1,964: Line 1,186:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|78
 
|78
Line 1,989: Line 1,201:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|79
 
|79
Line 2,006: Line 1,208:
 
|Fraction of lipid bilayer=lipid
 
|Fraction of lipid bilayer=lipid
 
|E. coli
 
|E. coli
|40.%
+
|0.4
 
|Percent
 
|Percent
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 2,014: Line 1,216:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|80
 
|80
Line 2,031: Line 1,223:
 
|Fraction of lipid bilayer=protein
 
|Fraction of lipid bilayer=protein
 
|E. coli
 
|E. coli
|60.%
+
|0.6
 
|Percent
 
|Percent
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 2,039: Line 1,231:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|81
|
+
|Copy numbers
|
+
|Large Molecule Copy Numbers
|
+
|Number of outer membrane proteins
|
 
|
 
|
 
|
 
|
 
|-
 
|81
 
|Copy numbers
 
|Large Molecule Copy Numbers
 
|Number of outer membrane proteins
 
 
|E. coli
 
|E. coli
 
|300000
 
|300000
Line 2,064: Line 1,246:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|82
 
|82
Line 2,089: Line 1,261:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|83
 
|83
Line 2,114: Line 1,276:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|84
 
|84
Line 2,139: Line 1,291:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|85
 
|85
Line 2,164: Line 1,306:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|86
|
+
|Copy numbers
|
+
|Large Molecule Copy Numbers
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|86
 
|Copy numbers
 
|Large Molecule Copy Numbers
 
 
|Number of cytoplasmic proteins
 
|Number of cytoplasmic proteins
 
|E. coli
 
|E. coli
|"1,000,000 (excluding ribo proteins)"
+
|1,000,000 (excluding ribo proteins)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 2,189: Line 1,321:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|87
 
|87
Line 2,214: Line 1,336:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|88
 
|88
Line 2,239: Line 1,351:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|89
 
|89
Line 2,264: Line 1,366:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|90
 
|90
Line 2,283: Line 1,375:
 
|1.89*10^9
 
|1.89*10^9
 
|amino acids
 
|amino acids
|"Neidhardt, F.C. et al. (1987) Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, 2nd ed. chapter 97, Table 2"
+
|Neidhardt, F.C. et al. (1987) Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, 2nd ed. chapter 97, Table 2
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
|"For a cell cycle of 30 minutes at 37deg, see reference for value at other division rates"
+
|For a cell cycle of 30 minutes at 37deg, see reference for value at other division rates
 
|Ron Milo
 
|Ron Milo
 +
|-
 +
|91
 +
|Genome
 +
|Replication
 +
|Time to replicate the chromosome
 +
|E. coli
 +
|40-67
 +
|Minutes
 +
|Neidhardt, F.C. et al. (1987) Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, 2nd ed. chapter 97, Table 1, 3
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
|
+
|Value in range depends on division rate
|
 
|
 
|
 
|
 
|
 
|-
 
|91
 
|Genome
 
|Replication
 
|Time to replicate the chromosome
 
|E. coli
 
|40-67
 
|Minutes
 
|"Neidhardt, F.C. et al. (1987) Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, 2nd ed. chapter 97, Table 1, 3"
 
|
 
|
 
|
 
|
 
|Value in range depends on division rate
 
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|92
 
|92
Line 2,333: Line 1,405:
 
|41-79
 
|41-79
 
|nucleotides
 
|nucleotides
|"Neidhardt, F.C. et al. (1987) Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, 2nd ed. chapter 97, Table 3"
+
|Neidhardt, F.C. et al. (1987) Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, 2nd ed. chapter 97, Table 3
 
|
 
|
 
|
 
|
|"Indirectly calculated from other parameters, see reference"
+
|Indirectly calculated from other parameters, see reference
 
|
 
|
 
|Value in range depends on division rate
 
|Value in range depends on division rate
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|93
 
|93
Line 2,364: Line 1,426:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|94
 
|94
Line 2,389: Line 1,441:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|95
 
|95
Line 2,414: Line 1,456:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|96
 
|96
Line 2,431: Line 1,463:
 
|Length of flagella
 
|Length of flagella
 
|E. coli
 
|E. coli
|"10-20 um or ~15,000 nm"
+
|10-20 um or ~15,000 nm
 
|microns
 
|microns
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 2,439: Line 1,471:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|97
 
|97
Line 2,464: Line 1,486:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|98
 
|98
Line 2,489: Line 1,501:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|99
 
|99
Line 2,514: Line 1,516:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|100
 
|100
Line 2,531: Line 1,523:
 
|Number of fliC monomers in filament
 
|Number of fliC monomers in filament
 
|E. coli
 
|E. coli
|"3000x11=33,000"
+
|3000x11=33,000
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 2,539: Line 1,531:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|101
|
+
|Copy numbers
|
+
|Statistics on Larger Molecule Complexes
|
+
|Number of flagella/cell
|
 
|
 
|
 
|
 
|
 
|-
 
|101
 
|Copy numbers
 
|Statistics on Larger Molecule Complexes
 
|Number of flagella/cell
 
 
|E. coli
 
|E. coli
 
|10
 
|10
Line 2,564: Line 1,546:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|102
 
|102
Line 2,589: Line 1,561:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|103
 
|103
Line 2,614: Line 1,576:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|104
 
|104
Line 2,639: Line 1,591:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|105
 
|105
Line 2,664: Line 1,606:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|106
|
+
|Lengths
|
+
|Statistics on Larger Molecule Complexes
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|106
 
|Lengths
 
|Statistics on Larger Molecule Complexes
 
 
|Diamter of pili
 
|Diamter of pili
 
|E. coli
 
|E. coli
Line 2,689: Line 1,621:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|107
 
|107
Line 2,714: Line 1,636:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|108
 
|108
Line 2,731: Line 1,643:
 
|Number of papA monomers/pilus
 
|Number of papA monomers/pilus
 
|E. coli
 
|E. coli
|"3000-30,000"
+
|3000-30,000
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 2,739: Line 1,651:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|109
 
|109
Line 2,764: Line 1,666:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|110
 
|110
Line 2,781: Line 1,673:
 
|Number of papA/cell
 
|Number of papA/cell
 
|E. coli
 
|E. coli
|"300,000-900,000"
+
|300,000-900,000
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 2,789: Line 1,681:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|111
|
+
|Copy numbers
|
+
|Statistics on Larger Molecule Complexes
|
+
|Number of ribosomes/cell
|
 
|
 
|
 
|
 
|
 
|-
 
|111
 
|Copy numbers
 
|Statistics on Larger Molecule Complexes
 
|Number of ribosomes/cell
 
 
|E. coli
 
|E. coli
 
|18000
 
|18000
Line 2,814: Line 1,696:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|112
 
|112
Line 2,839: Line 1,711:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|113
 
|113
Line 2,864: Line 1,726:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|114
 
|114
Line 2,889: Line 1,741:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|115
 
|115
Line 2,914: Line 1,756:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|116
|
+
|Copy numbers
|
+
|Statistics on Larger Molecule Complexes
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|116
 
|Copy numbers
 
|Statistics on Larger Molecule Complexes
 
 
|Number of rRNA in 30S subunit
 
|Number of rRNA in 30S subunit
 
|E. coli
 
|E. coli
Line 2,939: Line 1,771:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|117
 
|117
Line 2,964: Line 1,786:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|118
 
|118
Line 2,989: Line 1,801:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|119
 
|119
Line 3,014: Line 1,816:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|120
 
|120
Line 3,039: Line 1,831:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|121
|
+
|Weights
|
+
|Statistics on Larger Molecule Complexes
|
+
|MW of protein component
|
 
|
 
|
 
|
 
|
 
|-
 
|121
 
|Weights
 
|Statistics on Larger Molecule Complexes
 
|MW of protein component
 
 
|E. coli
 
|E. coli
 
|1000 kD
 
|1000 kD
Line 3,064: Line 1,846:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|122
 
|122
Line 3,089: Line 1,861:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|123
 
|123
Line 3,114: Line 1,876:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|124
 
|124
Line 3,139: Line 1,891:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|125
 
|125
Line 3,156: Line 1,898:
 
|Number of ions/cell
 
|Number of ions/cell
 
|E. coli
 
|E. coli
|"120,000,000 (300 mM)"
+
|120,000,000 (300 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,164: Line 1,906:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|126
|
+
|Copy numbers
|
+
|Small Molecule Copy Numbers
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|126
 
|Copy numbers
 
|Small Molecule Copy Numbers
 
 
|Number of small organics/cell
 
|Number of small organics/cell
 
|E. coli
 
|E. coli
|"18,000,000 (40-50 mM)"
+
|18,000,000 (40-50 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,189: Line 1,921:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|127
 
|127
Line 3,206: Line 1,928:
 
|Number of K ions
 
|Number of K ions
 
|E. coli
 
|E. coli
|"90,000,000 (200-250 mM)"
+
|90,000,000 (200-250 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,214: Line 1,936:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|128
 
|128
Line 3,231: Line 1,943:
 
|Number of Na ions
 
|Number of Na ions
 
|E. coli
 
|E. coli
|"2,000,000 (5 mM)"
+
|2,000,000 (5 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,239: Line 1,951:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|129
 
|129
Line 3,264: Line 1,966:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|130
 
|130
Line 3,281: Line 1,973:
 
|Number of Ca ions
 
|Number of Ca ions
 
|E. coli
 
|E. coli
|"2,300,000 (6 mM)"
+
|2,300,000 (6 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,289: Line 1,981:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|131
|
+
|Copy numbers
|
+
|Small Molecule Copy Numbers
|
+
|Number of free Ca ions
|
 
|
 
|
 
|
 
|
 
|-
 
|131
 
|Copy numbers
 
|Small Molecule Copy Numbers
 
|Number of free Ca ions
 
 
|E. coli
 
|E. coli
 
|40 (100 nM)
 
|40 (100 nM)
Line 3,314: Line 1,996:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|132
 
|132
Line 3,331: Line 2,003:
 
|Number of Cl ions
 
|Number of Cl ions
 
|E. coli
 
|E. coli
|"2,400,000 (6 mM)"
+
|2,400,000 (6 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,339: Line 2,011:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|133
 
|133
Line 3,356: Line 2,018:
 
|Number of Mg ions
 
|Number of Mg ions
 
|E. coli
 
|E. coli
|"4,000,000 (10 mM)"
+
|4,000,000 (10 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,364: Line 2,026:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|134
 
|134
Line 3,381: Line 2,033:
 
|Number of Fe ions
 
|Number of Fe ions
 
|E. coli
 
|E. coli
|"7,000,000 (18 mM)"
+
|7,000,000 (18 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,389: Line 2,041:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|135
 
|135
Line 3,406: Line 2,048:
 
|Number of Mn ions
 
|Number of Mn ions
 
|E. coli
 
|E. coli
|"1,700,000 (4 mM)"
+
|1,700,000 (4 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,414: Line 2,056:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|136
|
+
|Copy numbers
|
+
|Small Molecule Copy Numbers
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|136
 
|Copy numbers
 
|Small Molecule Copy Numbers
 
 
|Number of Zn ions
 
|Number of Zn ions
 
|E. coli
 
|E. coli
|"1,700,000 (4 mM)"
+
|1,700,000 (4 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,439: Line 2,071:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|137
 
|137
Line 3,456: Line 2,078:
 
|Number of Mo ions
 
|Number of Mo ions
 
|E. coli
 
|E. coli
|"1,700,000 (4 mM)"
+
|1,700,000 (4 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,464: Line 2,086:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|138
 
|138
Line 3,481: Line 2,093:
 
|Number of Cu ions
 
|Number of Cu ions
 
|E. coli
 
|E. coli
|"1,700,000 (4 mM)"
+
|1,700,000 (4 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,489: Line 2,101:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|139
 
|139
Line 3,506: Line 2,108:
 
|Number of PO4 ions
 
|Number of PO4 ions
 
|E. coli
 
|E. coli
|"2,000,000 (5 mM)"
+
|2,000,000 (5 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,514: Line 2,116:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|140
 
|140
Line 3,531: Line 2,123:
 
|Number of glucose/cell
 
|Number of glucose/cell
 
|E. coli
 
|E. coli
|"200,000-400,000 (0.5-1 mM)"
+
|200,000-400,000 (0.5-1 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,539: Line 2,131:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|141
|
+
|Copy numbers
|
+
|Small Molecule Copy Numbers
|
+
|Number of PEP/cell
|
+
|E. coli
|
+
|1,100,000 (2.8 mM)
|
+
|Unitless
|
+
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
|
+
|A list of primary sources is given in the reference
|-
 
|141
 
|Copy numbers
 
|Small Molecule Copy Numbers
 
|Number of PEP/cell
 
|E. coli
 
|"1,100,000 (2.8 mM)"
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|A list of primary sources is given in the reference
 
|
 
|
 
|
 
|
 
|"Ron Milo, Paul Jorgensen, Mike Springer"
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 +
|Ron Milo, Paul Jorgensen, Mike Springer
 
|-
 
|-
 
|142
 
|142
Line 3,581: Line 2,153:
 
|Number of pyruvate/cell
 
|Number of pyruvate/cell
 
|E. coli
 
|E. coli
|"370,000 (0.9 mM)"
+
|370,000 (0.9 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,589: Line 2,161:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|143
 
|143
Line 3,606: Line 2,168:
 
|Number of gluc-6-PO4/cell
 
|Number of gluc-6-PO4/cell
 
|E. coli
 
|E. coli
|"20,000 (0.05 mM)"
+
|20,000 (0.05 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,614: Line 2,176:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|144
 
|144
Line 3,631: Line 2,183:
 
|Number of ATP/cell
 
|Number of ATP/cell
 
|E. coli
 
|E. coli
|"500,000 - 3,000,000 (1.3-7.0 mM)"
+
|500,000 - 3,000,000 (1.3-7.0 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,639: Line 2,191:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|145
 
|145
Line 3,656: Line 2,198:
 
|Number of ADP/cell
 
|Number of ADP/cell
 
|E. coli
 
|E. coli
|"70,000 (0.17 mM)"
+
|70,000 (0.17 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,664: Line 2,206:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|146
 
|146
Line 3,681: Line 2,213:
 
|Number of NADP/cell
 
|Number of NADP/cell
 
|E. coli
 
|E. coli
|"240,000 (0.63 mM)"
+
|240,000 (0.63 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,689: Line 2,221:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|147
 
|147
Line 3,706: Line 2,228:
 
|Number of NADPH/cell
 
|Number of NADPH/cell
 
|E. coli
 
|E. coli
|"220,000 (0.56 mM)"
+
|220,000 (0.56 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,714: Line 2,236:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|148
 
|148
Line 3,731: Line 2,243:
 
|Number of all amino acids/cell
 
|Number of all amino acids/cell
 
|E. coli
 
|E. coli
|"6,000,000 (1.5 mM)"
+
|6,000,000 (1.5 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,739: Line 2,251:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|149
 
|149
Line 3,756: Line 2,258:
 
|Number of free Alanine/cell
 
|Number of free Alanine/cell
 
|E. coli
 
|E. coli
|"350,000 (0.8 mM)"
+
|350,000 (0.8 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,764: Line 2,266:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|150
 
|150
Line 3,781: Line 2,273:
 
|Number of free Cysteine/cell
 
|Number of free Cysteine/cell
 
|E. coli
 
|E. coli
|"80,000 (0.2 mM)"
+
|80,000 (0.2 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,789: Line 2,281:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|151
|
+
|Copy numbers
|
+
|Small Molecule Copy Numbers
|
+
|Number of free Aspartate/cell
|
+
|E. coli
|
+
|530,000 (1.34 mM)
|
+
|Unitless
|
+
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
|
+
|A list of primary sources is given in the reference
|-
 
|151
 
|Copy numbers
 
|Small Molecule Copy Numbers
 
|Number of free Aspartate/cell
 
|E. coli
 
|"530,000 (1.34 mM)"
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|A list of primary sources is given in the reference
 
|
 
|
 
|
 
|
 
|"Ron Milo, Paul Jorgensen, Mike Springer"
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 +
|Ron Milo, Paul Jorgensen, Mike Springer
 
|-
 
|-
 
|152
 
|152
Line 3,831: Line 2,303:
 
|Number of free Glutamate/cell
 
|Number of free Glutamate/cell
 
|E. coli
 
|E. coli
|"200,000 (0.5 mM)"
+
|200,000 (0.5 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,839: Line 2,311:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|153
 
|153
Line 3,856: Line 2,318:
 
|Number of free Phenylalanine/cell
 
|Number of free Phenylalanine/cell
 
|E. coli
 
|E. coli
|"170,000 (0.4 mM)"
+
|170,000 (0.4 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,864: Line 2,326:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|154
 
|154
Line 3,881: Line 2,333:
 
|Number of free Glycine/cell
 
|Number of free Glycine/cell
 
|E. coli
 
|E. coli
|"350,000 (0.8 mM)"
+
|350,000 (0.8 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,889: Line 2,341:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|155
 
|155
Line 3,906: Line 2,348:
 
|Number of free Histidine/cell
 
|Number of free Histidine/cell
 
|E. coli
 
|E. coli
|"80,000 (0.2 mM)"
+
|80,000 (0.2 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,914: Line 2,356:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|156
 
|156
Line 3,931: Line 2,363:
 
|Number of free Isoleucine/cell
 
|Number of free Isoleucine/cell
 
|E. coli
 
|E. coli
|"200,000 (0.5 mM)"
+
|200,000 (0.5 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,939: Line 2,371:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|157
 
|157
Line 3,956: Line 2,378:
 
|Number of free Lysine/cell
 
|Number of free Lysine/cell
 
|E. coli
 
|E. coli
|"190,000 (0.46 mM)"
+
|190,000 (0.46 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,964: Line 2,386:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|158
 
|158
Line 3,981: Line 2,393:
 
|Number of free Leucine/cell
 
|Number of free Leucine/cell
 
|E. coli
 
|E. coli
|"300,000 (0.7 mM)"
+
|300,000 (0.7 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 3,989: Line 2,401:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|159
 
|159
Line 4,006: Line 2,408:
 
|Number of free Methionine/cell
 
|Number of free Methionine/cell
 
|E. coli
 
|E. coli
|"40,000 (0.1 mM)"
+
|40,000 (0.1 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 4,014: Line 2,416:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|160
 
|160
Line 4,031: Line 2,423:
 
|Number of free Asparagine/cell
 
|Number of free Asparagine/cell
 
|E. coli
 
|E. coli
|"200,000 (0.5 mM)"
+
|200,000 (0.5 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 4,039: Line 2,431:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|161
|
+
|Copy numbers
|
+
|Small Molecule Copy Numbers
|
+
|Number of free Proline/cell
|
+
|E. coli
|
+
|200,000 (0.5 mM)
|
+
|Unitless
|
+
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
|
+
|A list of primary sources is given in the reference
|-
 
|161
 
|Copy numbers
 
|Small Molecule Copy Numbers
 
|Number of free Proline/cell
 
|E. coli
 
|"200,000 (0.5 mM)"
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|A list of primary sources is given in the reference
 
|
 
|
 
|
 
|
 
|"Ron Milo, Paul Jorgensen, Mike Springer"
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 +
|Ron Milo, Paul Jorgensen, Mike Springer
 
|-
 
|-
 
|162
 
|162
Line 4,081: Line 2,453:
 
|Number of free Glutamine/cell
 
|Number of free Glutamine/cell
 
|E. coli
 
|E. coli
|"200,000 (0.5 mM)"
+
|200,000 (0.5 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 4,089: Line 2,461:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|163
 
|163
Line 4,106: Line 2,468:
 
|Number of free Arginine/cell
 
|Number of free Arginine/cell
 
|E. coli
 
|E. coli
|"170,000 (0.4 mM)"
+
|170,000 (0.4 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 4,114: Line 2,476:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|164
 
|164
Line 4,131: Line 2,483:
 
|Number of free Serine/cell
 
|Number of free Serine/cell
 
|E. coli
 
|E. coli
|"300,000 (0.7 mM)"
+
|300,000 (0.7 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 4,139: Line 2,491:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|165
 
|165
Line 4,156: Line 2,498:
 
|Number of free Threonine/cell
 
|Number of free Threonine/cell
 
|E. coli
 
|E. coli
|"1,400,000 (3.49 mM)"
+
|1,400,000 (3.49 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 4,164: Line 2,506:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|166
 
|166
Line 4,181: Line 2,513:
 
|Number of free Valine/cell
 
|Number of free Valine/cell
 
|E. coli
 
|E. coli
|"240,000 (0.6 mM)"
+
|240,000 (0.6 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 4,189: Line 2,521:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|167
 
|167
Line 4,206: Line 2,528:
 
|Number of free Tryptophan/cell
 
|Number of free Tryptophan/cell
 
|E. coli
 
|E. coli
|"80,000 (0.2 mM)"
+
|80,000 (0.2 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 4,214: Line 2,536:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|168
 
|168
Line 4,231: Line 2,543:
 
|Number of free Tyrosine/cell
 
|Number of free Tyrosine/cell
 
|E. coli
 
|E. coli
|"300,000 (0.7 mM)"
+
|300,000 (0.7 mM)
 
|Unitless
 
|Unitless
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
Line 4,239: Line 2,551:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|169
 
|169
Line 4,260: Line 2,562:
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|A list of primary sources is given in the reference
 
|A list of primary sources is given in the reference
|"inner, pressure, osmotic, internal"
+
|inner, pressure, osmotic, internal
 
|
 
|
 
|
 
|
 
|Equivalent to about 5 Atm (50ton/m^2)
 
|Equivalent to about 5 Atm (50ton/m^2)
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|170
 
|170
Line 4,289: Line 2,581:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|171
|
+
|Energetic cost
|
+
|E. coli Metabolism
|
+
|glycolysis yields
|
+
|E. coli
|
+
|39241
|
+
|ATP
|
+
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
|
+
|A list of primary sources is given in the reference
|-
 
|171
 
|Energetic cost
 
|E. coli Metabolism
 
|glycolysis yields
 
|E. coli
 
|6/8/2007
 
|ATP
 
|http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/STAT_NEW.cgi
 
|A list of primary sources is given in the reference
 
|
 
|
 
|
 
|
 
|"Ron Milo, Paul Jorgensen, Mike Springer"
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 +
|Ron Milo, Paul Jorgensen, Mike Springer
 
|-
 
|-
 
|172
 
|172
Line 4,339: Line 2,611:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|173
 
|173
Line 4,364: Line 2,626:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|174
 
|174
Line 4,389: Line 2,641:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|175
 
|175
Line 4,414: Line 2,656:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|176
 
|176
Line 4,439: Line 2,671:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|177
 
|177
Line 4,464: Line 2,686:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|178
 
|178
Line 4,489: Line 2,701:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|179
 
|179
Line 4,514: Line 2,716:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|180
 
|180
Line 4,539: Line 2,731:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
+
|-
|
+
|181
|
+
|Growth
|
+
|E. coli Metabolism
|
+
|Cell generation time
|
 
|
 
|
 
|
 
|
 
|-
 
|181
 
|Growth
 
|E. coli Metabolism
 
|Cell generation time
 
 
|E. coli
 
|E. coli
 
|30
 
|30
Line 4,564: Line 2,746:
 
|
 
|
 
|
 
|
|"Ron Milo, Paul Jorgensen, Mike Springer"
+
|Ron Milo, Paul Jorgensen, Mike Springer
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|182
 
|182
Line 4,583: Line 2,755:
 
|12
 
|12
 
|pg
 
|pg
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|A list of primary sources is given in the reference
 
|A list of primary sources is given in the reference
 
|
 
|
Line 4,590: Line 2,762:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|183
 
|183
Line 4,608: Line 2,770:
 
|25
 
|25
 
|pg
 
|pg
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 4,615: Line 2,777:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|184
 
|184
Line 4,633: Line 2,785:
 
|2 x 10^6
 
|2 x 10^6
 
|rDNA repeats
 
|rDNA repeats
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 4,640: Line 2,792:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|185
 
|185
Line 4,658: Line 2,800:
 
|4000
 
|4000
 
|pg
 
|pg
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
|"Igor and Dawid, Dev. Biol 27:504-518 (1972)"
+
|Igor and Dawid, Dev. Biol 27:504-518 (1972)
 
|
 
|
 
|Egg
 
|Egg
Line 4,665: Line 2,807:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
+
|-
|
+
|186
|
+
|General statistics
|
+
|DNA
|
+
|mitochondrial DNA
|
+
|X. laevis
|
+
|10^8
|
+
|genomes
|
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
|
 
|-
 
|186
 
|General statistics
 
|DNA
 
|mitochondrial DNA
 
|X. laevis
 
|10^8
 
|genomes
 
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
 
 
|
 
|
 
|
 
|
Line 4,690: Line 2,822:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|187
 
|187
Line 4,708: Line 2,830:
 
|5
 
|5
 
|ug
 
|ug
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 4,715: Line 2,837:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|188
 
|188
Line 4,733: Line 2,845:
 
|60
 
|60
 
|ng
 
|ng
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 4,740: Line 2,852:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|189
 
|189
Line 4,758: Line 2,860:
 
|10^12
 
|10^12
 
|RNAs
 
|RNAs
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 4,765: Line 2,867:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|190
 
|190
Line 4,783: Line 2,875:
 
|60
 
|60
 
|ng
 
|ng
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 4,790: Line 2,882:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
+
|-
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
 
|191
 
|191
 
|General statistics
 
|General statistics
Line 4,808: Line 2,890:
 
|1.5 x 10^12
 
|1.5 x 10^12
 
|tRNAs
 
|tRNAs
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 4,815: Line 2,897:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|192
 
|192
Line 4,833: Line 2,905:
 
|0.07
 
|0.07
 
|ng
 
|ng
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 4,840: Line 2,912:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|193
 
|193
Line 4,858: Line 2,920:
 
|8 x 10^8
 
|8 x 10^8
 
|RNAs
 
|RNAs
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 4,865: Line 2,927:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|194
 
|194
Line 4,883: Line 2,935:
 
|80
 
|80
 
|ng
 
|ng
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 4,890: Line 2,942:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|195
 
|195
Line 4,908: Line 2,950:
 
|5 x 10^10 (if 2500bp long on average)
 
|5 x 10^10 (if 2500bp long on average)
 
|RNAs
 
|RNAs
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 4,915: Line 2,957:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
+
|-
|
+
|196
|
+
|General statistics
|
+
|RNA
|
+
|ribosomal protein mRNA
|
+
|X. laevis
|
+
|10
|
+
|ng
|
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
|
 
|-
 
|196
 
|General statistics
 
|RNA
 
|ribosomal protein mRNA
 
|X. laevis
 
|10
 
|ng
 
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
 
 
|
 
|
 
|
 
|
Line 4,940: Line 2,972:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|197
 
|197
Line 4,958: Line 2,980:
 
|2 x 10^10
 
|2 x 10^10
 
|transcripts
 
|transcripts
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 4,965: Line 2,987:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|198
 
|198
Line 4,983: Line 2,995:
 
|1
 
|1
 
|ng
 
|ng
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 4,990: Line 3,002:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|199
 
|199
Line 5,008: Line 3,010:
 
|5 x 10^8
 
|5 x 10^8
 
|transcripts
 
|transcripts
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 5,015: Line 3,017:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|200
 
|200
Line 5,033: Line 3,025:
 
|0.004
 
|0.004
 
|ng
 
|ng
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 5,040: Line 3,032:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
+
|-
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
 
|201
 
|201
 
|General statistics
 
|General statistics
Line 5,058: Line 3,040:
 
|10^6
 
|10^6
 
|transcripts
 
|transcripts
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 5,065: Line 3,047:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|202
 
|202
Line 5,083: Line 3,055:
 
|10^12
 
|10^12
 
|ribosomes
 
|ribosomes
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 5,090: Line 3,062:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|203
 
|203
Line 5,108: Line 3,070:
 
|250
 
|250
 
|ug
 
|ug
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 5,115: Line 3,077:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|204
 
|204
Line 5,133: Line 3,085:
 
|25
 
|25
 
|ug
 
|ug
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 5,140: Line 3,092:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|205
 
|205
Line 5,158: Line 3,100:
 
|5 x 10^14 (if 30K average)
 
|5 x 10^14 (if 30K average)
 
|proteins
 
|proteins
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 5,165: Line 3,107:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
+
|-
|
+
|206
|
+
|General statistics
|
+
|Protein
|
+
|Histones
|
+
|X. laevis
|
+
|140
|
+
|ng
|
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
|
 
|-
 
|206
 
|General statistics
 
|Protein
 
|Histones
 
|X. laevis
 
|140
 
|ng
 
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
 
 
|
 
|
 
|
 
|
Line 5,190: Line 3,122:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|207
 
|207
Line 5,208: Line 3,130:
 
|5 x 10^12
 
|5 x 10^12
 
|histone proteins
 
|histone proteins
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 5,215: Line 3,137:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|208
 
|208
Line 5,233: Line 3,145:
 
|250
 
|250
 
|ng
 
|ng
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 5,240: Line 3,152:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|209
 
|209
Line 5,258: Line 3,160:
 
|5 x 10^12
 
|5 x 10^12
 
|nucleoplasmin proteins
 
|nucleoplasmin proteins
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 5,265: Line 3,167:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|210
 
|210
Line 5,283: Line 3,175:
 
|10^5 greater than a somatic cell
 
|10^5 greater than a somatic cell
 
|
 
|
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 5,290: Line 3,182:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
+
|-
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
 
|211
 
|211
 
|General statistics
 
|General statistics
Line 5,308: Line 3,190:
 
|5 x 10^5 greater than a somatic cell
 
|5 x 10^5 greater than a somatic cell
 
|
 
|
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 5,315: Line 3,197:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|212
 
|212
Line 5,333: Line 3,205:
 
|10 to 15
 
|10 to 15
 
|pmol
 
|pmol
|"Woodland and Pestell, Biochem J. 127:597-605 (1972)"
+
|Woodland and Pestell, Biochem J. 127:597-605 (1972)
 
|
 
|
 
|
 
|
Line 5,340: Line 3,212:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|213
 
|213
Line 5,358: Line 3,220:
 
|250
 
|250
 
|pmol
 
|pmol
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 5,365: Line 3,227:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|214
 
|214
Line 5,383: Line 3,235:
 
|40
 
|40
 
|pmol
 
|pmol
|"Hausen and Riebesell, The Early Development of Xenopus laevis, 1991"
+
|Hausen and Riebesell, The Early Development of Xenopus laevis, 1991
 
|
 
|
 
|
 
|
Line 5,390: Line 3,242:
 
|
 
|
 
|Paul Jorgensen
 
|Paul Jorgensen
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|215
 
|215
Line 5,415: Line 3,257:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
+
|-
|
+
|216
|
+
|General statistics
|
+
|Genome
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|216
 
|General statistics
 
|Genome
 
 
|Genome Size
 
|Genome Size
 
|Sacchromyces cerevisiae (Yeast)
 
|Sacchromyces cerevisiae (Yeast)
Line 5,440: Line 3,272:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|217
 
|217
Line 5,465: Line 3,287:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|218
 
|218
Line 5,490: Line 3,302:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|219
 
|219
Line 5,515: Line 3,317:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|220
 
|220
Line 5,540: Line 3,332:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
+
|-
|
+
|221
|
+
|General statistics
|
+
|Genome
|
+
|Genome Size
|
+
|Anapheles gambiae (Mosquito)
|
+
|280*10^6
|
+
|Base pairs
|
+
|http://wormlab.caltech.edu/briggsae/genomeSize.html
|
 
|-
 
|221
 
|General statistics
 
|Genome
 
|Genome Size
 
|Anapheles gambiae (Mosquito)
 
|280*10^6
 
|Base pairs
 
|http://wormlab.caltech.edu/briggsae/genomeSize.html
 
 
|
 
|
 
|
 
|
Line 5,565: Line 3,347:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|222
 
|222
Line 5,590: Line 3,362:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|223
 
|223
Line 5,615: Line 3,377:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|224
 
|224
Line 5,640: Line 3,392:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|225
 
|225
Line 5,665: Line 3,407:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|226
 
|226
Line 5,690: Line 3,422:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|227
 
|227
Line 5,715: Line 3,437:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|228
 
|228
Line 5,740: Line 3,452:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|229
 
|229
Line 5,765: Line 3,467:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|230
 
|230
Line 5,781: Line 3,473:
 
|Number of genes
 
|Number of genes
 
|Neurospora crassa (Fungus)
 
|Neurospora crassa (Fungus)
|"10,000 (Release Apr 2003)"
+
|10,000 (Release Apr 2003)
 
|Genes
 
|Genes
 
|http://wormlab.caltech.edu/briggsae/genomeSize.html
 
|http://wormlab.caltech.edu/briggsae/genomeSize.html
Line 5,790: Line 3,482:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
 +
|-
 +
|231
 +
|General statistics
 +
|Genome
 +
|Number of genes
 +
|C. elegans (Nematode)
 +
|20,621 (Release WS108)
 +
|Genes
 +
|http://wormlab.caltech.edu/briggsae/genomeSize.html
 
|
 
|
 
|
 
|
Line 5,795: Line 3,496:
 
|
 
|
 
|
 
|
|
+
|Ron Milo
|
 
|
 
|
 
|
 
|-
 
|231
 
|General statistics
 
|Genome
 
|Number of genes
 
|C. elegans (Nematode)
 
|"20,621 (Release WS108)"
 
|Genes
 
|http://wormlab.caltech.edu/briggsae/genomeSize.html
 
|
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|232
 
|232
Line 5,831: Line 3,503:
 
|Number of genes
 
|Number of genes
 
|C. briggsae (Nematode)
 
|C. briggsae (Nematode)
|"19,507 (Release Sept 2003)"
+
|19,507 (Release Sept 2003)
 
|Genes
 
|Genes
 
|http://wormlab.caltech.edu/briggsae/genomeSize.html
 
|http://wormlab.caltech.edu/briggsae/genomeSize.html
Line 5,840: Line 3,512:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|233
 
|233
Line 5,856: Line 3,518:
 
|Number of genes
 
|Number of genes
 
|Drosophila melanogaster (Fruit fly)
 
|Drosophila melanogaster (Fruit fly)
|"13,647 (Release 3.1)"
+
|13,647 (Release 3.1)
 
|Genes
 
|Genes
 
|http://wormlab.caltech.edu/briggsae/genomeSize.html
 
|http://wormlab.caltech.edu/briggsae/genomeSize.html
Line 5,865: Line 3,527:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|234
 
|234
Line 5,890: Line 3,542:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|235
 
|235
Line 5,915: Line 3,557:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|236
 
|236
Line 5,940: Line 3,572:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|237
 
|237
Line 5,965: Line 3,587:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|238
 
|238
Line 5,990: Line 3,602:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|239
 
|239
Line 6,015: Line 3,617:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|240
 
|240
Line 6,033: Line 3,625:
 
|9.8
 
|9.8
 
|Minutes
 
|Minutes
|"R. G. Eagon, J. Bacteriol. 83:736-737, 1962"
+
|R. G. Eagon, J. Bacteriol. 83:736-737, 1962
 
|
 
|
 
|
 
|
Line 6,040: Line 3,632:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
+
|-
|
+
|241
|
+
|Growth
|
+
|Generation time
|
+
|Minimal generation time
|
+
|Escherichia coli
|
+
|17
|
+
|Minutes
|
+
|http://textbookofbacteriology.net/growth.html
|
 
|-
 
|241
 
|Growth
 
|Generation time
 
|Minimal generation time
 
|Escherichia coli
 
|17
 
|Minutes
 
|http://textbookofbacteriology.net/growth.html
 
 
|
 
|
 
|
 
|
Line 6,065: Line 3,647:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|242
 
|242
Line 6,090: Line 3,662:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|243
 
|243
Line 6,115: Line 3,677:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|244
 
|244
Line 6,140: Line 3,692:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|245
 
|245
Line 6,165: Line 3,707:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|246
 
|246
Line 6,190: Line 3,722:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|247
 
|247
Line 6,215: Line 3,737:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|248
 
|248
Line 6,240: Line 3,752:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|249
 
|249
Line 6,265: Line 3,767:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|250
 
|250
Line 6,290: Line 3,782:
 
|
 
|
 
|Tom Shimizu
 
|Tom Shimizu
|
+
|-
|
+
|251
|
+
|copy numbers
|
+
|Chemotaxis
|
+
|Number of major receptors (Tsr+Tar)
|
+
|E. coli
|
+
|14000
|
+
|proteins
|
+
|http://www.pdn.cam.ac.uk/groups/comp-cell/Rates.html
|
+
|Li & Hazelbauer (PNAS, 2004)
|-
 
|251
 
|copy numbers
 
|Chemotaxis
 
|Number of major receptors (Tsr+Tar)
 
|E. coli
 
|14000
 
|proteins
 
|http://www.pdn.cam.ac.uk/groups/comp-cell/Rates.html
 
|"Li & Hazelbauer (PNAS, 2004)"
 
 
|
 
|
 
|strain RP437 grown in TB medium
 
|strain RP437 grown in TB medium
Line 6,315: Line 3,797:
 
|
 
|
 
|Tom Shimizu
 
|Tom Shimizu
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|252
 
|252
Line 6,334: Line 3,806:
 
|proteins
 
|proteins
 
|http://www.pdn.cam.ac.uk/groups/comp-cell/Rates.html
 
|http://www.pdn.cam.ac.uk/groups/comp-cell/Rates.html
|"Li & Hazelbauer (PNAS, 2004)"
+
|Li & Hazelbauer (PNAS, 2004)
 
|
 
|
 
|strain RP437 grown in TB medium
 
|strain RP437 grown in TB medium
Line 6,340: Line 3,812:
 
|
 
|
 
|Tom Shimizu
 
|Tom Shimizu
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|253
 
|253
Line 6,359: Line 3,821:
 
|proteins
 
|proteins
 
|http://www.pdn.cam.ac.uk/groups/comp-cell/Rates.html
 
|http://www.pdn.cam.ac.uk/groups/comp-cell/Rates.html
|"Li & Hazelbauer (PNAS, 2004)"
+
|Li & Hazelbauer (PNAS, 2004)
 
|
 
|
 
|strain RP437 grown in TB medium
 
|strain RP437 grown in TB medium
Line 6,365: Line 3,827:
 
|
 
|
 
|Tom Shimizu
 
|Tom Shimizu
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|254
 
|254
Line 6,384: Line 3,836:
 
|proteins
 
|proteins
 
|http://www.pdn.cam.ac.uk/groups/comp-cell/Rates.html
 
|http://www.pdn.cam.ac.uk/groups/comp-cell/Rates.html
|"Li & Hazelbauer (PNAS, 2004)"
+
|Li & Hazelbauer (PNAS, 2004)
 
|
 
|
 
|strain RP437 grown in TB medium
 
|strain RP437 grown in TB medium
Line 6,390: Line 3,842:
 
|
 
|
 
|Tom Shimizu
 
|Tom Shimizu
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|255
 
|255
Line 6,409: Line 3,851:
 
|proteins
 
|proteins
 
|http://www.pdn.cam.ac.uk/groups/comp-cell/Rates.html
 
|http://www.pdn.cam.ac.uk/groups/comp-cell/Rates.html
|"Li & Hazelbauer (PNAS, 2004)"
+
|Li & Hazelbauer (PNAS, 2004)
 
|
 
|
 
|strain RP437 grown in TB medium
 
|strain RP437 grown in TB medium
Line 6,415: Line 3,857:
 
|
 
|
 
|Tom Shimizu
 
|Tom Shimizu
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|256
 
|256
Line 6,434: Line 3,866:
 
|proteins
 
|proteins
 
|http://www.pdn.cam.ac.uk/groups/comp-cell/Rates.html
 
|http://www.pdn.cam.ac.uk/groups/comp-cell/Rates.html
|"Li & Hazelbauer (PNAS, 2004)"
+
|Li & Hazelbauer (PNAS, 2004)
 
|
 
|
 
|strain RP437 grown in TB medium
 
|strain RP437 grown in TB medium
Line 6,440: Line 3,872:
 
|
 
|
 
|Tom Shimizu
 
|Tom Shimizu
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|257
 
|257
Line 6,459: Line 3,881:
 
|proteins
 
|proteins
 
|http://www.pdn.cam.ac.uk/groups/comp-cell/Rates.html
 
|http://www.pdn.cam.ac.uk/groups/comp-cell/Rates.html
|"Li & Hazelbauer (PNAS, 2004)"
+
|Li & Hazelbauer (PNAS, 2004)
 
|
 
|
 
|strain RP437 grown in TB medium
 
|strain RP437 grown in TB medium
Line 6,465: Line 3,887:
 
|
 
|
 
|Tom Shimizu
 
|Tom Shimizu
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|258
 
|258
Line 6,484: Line 3,896:
 
|proteins
 
|proteins
 
|http://www.pdn.cam.ac.uk/groups/comp-cell/Rates.html
 
|http://www.pdn.cam.ac.uk/groups/comp-cell/Rates.html
|"Li & Hazelbauer (PNAS, 2004)"
+
|Li & Hazelbauer (PNAS, 2004)
 
|
 
|
 
|strain RP437 grown in TB medium
 
|strain RP437 grown in TB medium
Line 6,490: Line 3,902:
 
|
 
|
 
|Tom Shimizu
 
|Tom Shimizu
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|259
 
|259
Line 6,508: Line 3,910:
 
|4
 
|4
 
|seconds
 
|seconds
|"Segall, Block & Berg (PNAS, 1986)"
+
|Segall, Block & Berg (PNAS, 1986)
|"Li & Hazelbauer (PNAS, 2004)"
+
|Li & Hazelbauer (PNAS, 2004)
 
|
 
|
 
|
 
|
Line 6,515: Line 3,917:
 
|
 
|
 
|Tom Shimizu
 
|Tom Shimizu
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|260
 
|260
Line 6,533: Line 3,925:
 
|>5
 
|>5
 
|orders of magnitude
 
|orders of magnitude
|"Mesibov, Ordal & Adler (J. Gen. Physiol., 1973)"
+
|Mesibov, Ordal & Adler (J. Gen. Physiol., 1973)
 
|
 
|
 
|
 
|
Line 6,540: Line 3,932:
 
|
 
|
 
|Tom Shimizu
 
|Tom Shimizu
 +
|-
 +
|261
 +
|Biophysical parameters
 +
|Diffusion rates
 +
|Small molecule
 +
|Generic
 +
|~50
 +
|10^-7*cm^2/sec
 +
|"Cell movements - from molecules to motility", pp. 6, Dennis Bray, 2nd ed. Garland, 2001
 +
|Hille (1992), Berg (1993), Atkins (1994)
 
|
 
|
|
+
|order of magnitude. ~1msec for a distance of 1 micron
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|261
 
|Biophysical parameters
 
|Diffusion rates
 
|Small molecule
 
|Generic
 
|~50
 
|10^-7*cm^2/sec
 
|"""Cell movements - from molecules to motility"", pp. 6, Dennis Bray, 2nd ed. Garland, 2001"
 
|"Hille (1992), Berg (1993), Atkins (1994)"
 
|
 
|order of magnitude. ~1msec for a distance of 1 micron
 
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|262
 
|262
Line 6,583: Line 3,955:
 
|~5
 
|~5
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Cell movements - from molecules to motility"", pp. 6, Dennis Bray, 2nd ed. Garland, 2001"
+
|"Cell movements - from molecules to motility", pp. 6, Dennis Bray, 2nd ed. Garland, 2001
|"Hille (1992), Berg (1993), Atkins (1994)"
+
|Hille (1992), Berg (1993), Atkins (1994)
 
|
 
|
 
|order of magnitude. ~10msec for a distance of 1 micron
 
|order of magnitude. ~10msec for a distance of 1 micron
Line 6,590: Line 3,962:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|263
 
|263
Line 6,608: Line 3,970:
 
|~0.5
 
|~0.5
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Cell movements - from molecules to motility"", pp. 6, Dennis Bray, 2nd ed. Garland, 2001"
+
|"Cell movements - from molecules to motility", pp. 6, Dennis Bray, 2nd ed. Garland, 2001
|"Hille (1992), Berg (1993), Atkins (1994)"
+
|Hille (1992), Berg (1993), Atkins (1994)
 
|
 
|
 
|order of magnitude. ~0.1sec for a distance of 1 micron
 
|order of magnitude. ~0.1sec for a distance of 1 micron
Line 6,615: Line 3,977:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|264
 
|264
Line 6,633: Line 3,985:
 
|~0.05
 
|~0.05
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Cell movements - from molecules to motility"", pp. 6, Dennis Bray, 2nd ed. Garland, 2001"
+
|"Cell movements - from molecules to motility", pp. 6, Dennis Bray, 2nd ed. Garland, 2001
|"Hille (1992), Berg (1993), Atkins (1994)"
+
|Hille (1992), Berg (1993), Atkins (1994)
 
|
 
|
 
|order of magnitude. ~1sec for a distance of 1 micron
 
|order of magnitude. ~1sec for a distance of 1 micron
Line 6,640: Line 3,992:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|265
 
|265
Line 6,658: Line 4,000:
 
|~0.005
 
|~0.005
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Cell movements - from molecules to motility"", pp. 6, Dennis Bray, 2nd ed. Garland, 2001"
+
|"Cell movements - from molecules to motility", pp. 6, Dennis Bray, 2nd ed. Garland, 2001
|"Hille (1992), Berg (1993), Atkins (1994)"
+
|Hille (1992), Berg (1993), Atkins (1994)
 
|
 
|
 
|order of magnitude. ~10sec for a distance of 1 micron
 
|order of magnitude. ~10sec for a distance of 1 micron
Line 6,665: Line 4,007:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|266
 
|266
Line 6,683: Line 4,015:
 
|12.9
 
|12.9
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 1984"
+
|"Proteins", Creighton 1984
 
|
 
|
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|267
 
|267
Line 6,708: Line 4,030:
 
|13
 
|13
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 1985"
+
|"Proteins", Creighton 1985
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1979"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1979
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|268
 
|268
Line 6,733: Line 4,045:
 
|10.7
 
|10.7
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 1986"
+
|"Proteins", Creighton 1986
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1980"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1980
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|269
 
|269
Line 6,758: Line 4,060:
 
|11.3
 
|11.3
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 1987"
+
|"Proteins", Creighton 1987
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1981"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1981
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|270
 
|270
Line 6,783: Line 4,075:
 
|11.3
 
|11.3
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 1988"
+
|"Proteins", Creighton 1988
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1982"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1982
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
 +
|-
 +
|271
 +
|Biophysical parameters
 +
|Diffusion rates
 +
|Diffusion rate of Adenylate kinase
 +
|Porcine
 +
|10.2
 +
|10^-7*cm^2/sec
 +
|"Proteins", Creighton 1989
 +
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1983
 
|
 
|
 +
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
|
+
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|271
 
|Biophysical parameters
 
|Diffusion rates
 
|Diffusion rate of Adenylate kinase
 
|Porcine
 
|10.2
 
|10^-7*cm^2/sec
 
|"""Proteins"", Creighton 1989"
 
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1983"
 
|
 
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
 
|
 
|
 
|Ron Milo
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|272
 
|272
Line 6,833: Line 4,105:
 
|9.3
 
|9.3
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 1990"
+
|"Proteins", Creighton 1990
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1984"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1984
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|273
 
|273
Line 6,858: Line 4,120:
 
|10
 
|10
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 1991"
+
|"Proteins", Creighton 1991
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1985"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1985
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|274
 
|274
Line 6,883: Line 4,135:
 
|9.48
 
|9.48
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 1992"
+
|"Proteins", Creighton 1992
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1986"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1986
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|275
 
|275
Line 6,908: Line 4,150:
 
|9.5
 
|9.5
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 1993"
+
|"Proteins", Creighton 1993
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1987"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1987
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|276
 
|276
Line 6,933: Line 4,165:
 
|9.04
 
|9.04
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 1994"
+
|"Proteins", Creighton 1994
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1988"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1988
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|277
 
|277
Line 6,958: Line 4,180:
 
|10.7
 
|10.7
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 1995"
+
|"Proteins", Creighton 1995
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1989"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1989
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|278
 
|278
Line 6,983: Line 4,195:
 
|8.92
 
|8.92
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 1996"
+
|"Proteins", Creighton 1996
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1990"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1990
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|279
 
|279
Line 7,008: Line 4,210:
 
|9.2
 
|9.2
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 1997"
+
|"Proteins", Creighton 1997
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1991"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1991
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|280
 
|280
Line 7,033: Line 4,225:
 
|6.38
 
|6.38
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 1998"
+
|"Proteins", Creighton 1998
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1992"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1992
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
 +
|-
 +
|281
 +
|Biophysical parameters
 +
|Diffusion rates
 +
|Diffusion rate of Concanavalin A
 +
|Yeast
 +
|6.34
 +
|10^-7*cm^2/sec
 +
|"Proteins", Creighton 1999
 +
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1993
 
|
 
|
 +
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
|
+
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|281
 
|Biophysical parameters
 
|Diffusion rates
 
|Diffusion rate of Concanavalin A
 
|Yeast
 
|6.34
 
|10^-7*cm^2/sec
 
|"""Proteins"", Creighton 1999"
 
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1993"
 
|
 
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
 
|
 
|
 
|Ron Milo
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|282
 
|282
 
|Biophysical parameters
 
|Biophysical parameters
 
|Diffusion rates
 
|Diffusion rates
|"Diffusion rate of Hemoglobin, oxy"
+
|Diffusion rate of Hemoglobin, oxy
 
|Equine
 
|Equine
 
|6.02
 
|6.02
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 2000"
+
|"Proteins", Creighton 2000
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1994"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1994
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|283
 
|283
Line 7,108: Line 4,270:
 
|5.76
 
|5.76
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 2001"
+
|"Proteins", Creighton 2001
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1995"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1995
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|284
 
|284
Line 7,133: Line 4,285:
 
|6.23
 
|6.23
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 2002"
+
|"Proteins", Creighton 2002
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1996"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1996
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|285
 
|285
Line 7,158: Line 4,300:
 
|4.99
 
|4.99
 
|10^-7*cm^2/sec
 
|10^-7*cm^2/sec
|"""Proteins"", Creighton 2003"
+
|"Proteins", Creighton 2003
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1997"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1997
 
|
 
|
|"Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration"
+
|Translational diffusion coefficient at 20degC in water, extraploated to zero protein concentration
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|286
 
|286
Line 7,183: Line 4,315:
 
|6520
 
|6520
 
|Dalton
 
|Dalton
|"""Proteins"", Creighton 2004"
+
|"Proteins", Creighton 2004
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1998"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1998
 
|
 
|
 
|Calculated from covalent structure
 
|Calculated from covalent structure
Line 7,190: Line 4,322:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|287
 
|287
Line 7,208: Line 4,330:
 
|12310
 
|12310
 
|Dalton
 
|Dalton
|"""Proteins"", Creighton 2005"
+
|"Proteins", Creighton 2005
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1999"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 1999
 
|
 
|
 
|Calculated from covalent structure
 
|Calculated from covalent structure
Line 7,215: Line 4,337:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|288
 
|288
Line 7,233: Line 4,345:
 
|13690
 
|13690
 
|Dalton
 
|Dalton
|"""Proteins"", Creighton 2006"
+
|"Proteins", Creighton 2006
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 2000"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 2000
 
|
 
|
 
|Calculated from covalent structure
 
|Calculated from covalent structure
Line 7,240: Line 4,352:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|289
 
|289
Line 7,258: Line 4,360:
 
|14320
 
|14320
 
|Dalton
 
|Dalton
|"""Proteins"", Creighton 2007"
+
|"Proteins", Creighton 2007
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 2001"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 2001
 
|
 
|
 
|Calculated from covalent structure
 
|Calculated from covalent structure
Line 7,265: Line 4,367:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|290
 
|290
Line 7,283: Line 4,375:
 
|17800
 
|17800
 
|Dalton
 
|Dalton
|"""Proteins"", Creighton 2008"
+
|"Proteins", Creighton 2008
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 2002"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 2002
 
|
 
|
 
|Calculated from covalent structure
 
|Calculated from covalent structure
Line 7,290: Line 4,382:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
 +
|-
 +
|291
 +
|Biophysical parameters
 +
|Molecular weights
 +
|Molecular weight of Adenylate kinase
 +
|Porcine
 +
|21640
 +
|Dalton
 +
|"Proteins", Creighton 2009
 +
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 2003
 
|
 
|
|
+
|Calculated from covalent structure
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|291
 
|Biophysical parameters
 
|Molecular weights
 
|Molecular weight of Adenylate kinase
 
|Porcine
 
|21640
 
|Dalton
 
|"""Proteins"", Creighton 2009"
 
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 2003"
 
|
 
|Calculated from covalent structure
 
 
|
 
|
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|292
 
|292
Line 7,333: Line 4,405:
 
|23200
 
|23200
 
|Dalton
 
|Dalton
|"""Proteins"", Creighton 2010"
+
|"Proteins", Creighton 2010
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 2004"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 2004
 
|
 
|
 
|Calculated from covalent structure
 
|Calculated from covalent structure
Line 7,340: Line 4,412:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|293
 
|293
Line 7,358: Line 4,420:
 
|23500
 
|23500
 
|Dalton
 
|Dalton
|"""Proteins"", Creighton 2011"
+
|"Proteins", Creighton 2011
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 2005"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 2005
 
|
 
|
 
|Calculated from covalent structure
 
|Calculated from covalent structure
Line 7,365: Line 4,427:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|294
 
|294
Line 7,383: Line 4,435:
 
|25670
 
|25670
 
|Dalton
 
|Dalton
|"""Proteins"", Creighton 2012"
+
|"Proteins", Creighton 2012
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 2006"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 2006
 
|
 
|
 
|Calculated from covalent structure
 
|Calculated from covalent structure
Line 7,390: Line 4,442:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|295
 
|295
Line 7,408: Line 4,450:
 
|25900
 
|25900
 
|Dalton
 
|Dalton
|"""Proteins"", Creighton 2013"
+
|"Proteins", Creighton 2013
|"Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 2007"
+
|Squire & Himmel, Arch. Biochem. Biophys. 196:165-177, 2007
 
|
 
|
 
|Calculated from covalent structure
 
|Calculated from covalent structure
Line 7,415: Line 4,457:
 
|
 
|
 
|Ron Milo
 
|Ron Milo
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
|
 
 
|-
 
|-
 
|296
 
|296