Difference between revisions of "BioMicroCenter:News"

From OpenWetWare
Jump to: navigation, search
(March 2010)
(April 2010)
Line 5: Line 5:
 
|rowspan=2 valign=top style="width:55%;padding-right:10px;"|  
 
|rowspan=2 valign=top style="width:55%;padding-right:10px;"|  
  
=== April 2010 ===
+
=== April 1, 2010 ===
  
 
Thanks to the generosity of a grant from the [http://www.moore.org/ Moore Foundation] to Dr. Penny Chisholm and ARRA funding to Dr. Chris Burge the BioMicro Center will be significantly expanding our sequencing capacity over the next 4-6 months. The first step of this expansion begins today with the addition of a new [http://www.illumina.com/systems/genome_analyzer_iix.ilmn GAIIx] and [http://www.illumina.com/systems/genome_analyzer/cbot.ilmn cBot] from Illumina. We are working hard to get ''"Ryland"'' and ''"Agustus Gloop"'' up and running and we hope to be able to shorten our queue times very soon!
 
Thanks to the generosity of a grant from the [http://www.moore.org/ Moore Foundation] to Dr. Penny Chisholm and ARRA funding to Dr. Chris Burge the BioMicro Center will be significantly expanding our sequencing capacity over the next 4-6 months. The first step of this expansion begins today with the addition of a new [http://www.illumina.com/systems/genome_analyzer_iix.ilmn GAIIx] and [http://www.illumina.com/systems/genome_analyzer/cbot.ilmn cBot] from Illumina. We are working hard to get ''"Ryland"'' and ''"Agustus Gloop"'' up and running and we hope to be able to shorten our queue times very soon!
 
  
 
=== March 2010 ===
 
=== March 2010 ===

Revision as of 07:21, 1 April 2010

BioMicroCenter-header6.jpg

HOME -- SEQUENCING -- LIBRARY PREP -- HIGH-THROUGHPUT -- COMPUTING -- OTHER TECHNOLOGY


April 1, 2010

Thanks to the generosity of a grant from the Moore Foundation to Dr. Penny Chisholm and ARRA funding to Dr. Chris Burge the BioMicro Center will be significantly expanding our sequencing capacity over the next 4-6 months. The first step of this expansion begins today with the addition of a new GAIIx and cBot from Illumina. We are working hard to get "Ryland" and "Agustus Gloop" up and running and we hope to be able to shorten our queue times very soon!

March 2010

Due to an increase in the cost of Illumina reagents, increase in data file size, and the complexity of sample preps, we have had to increase, slightly, the cost of Illumina sequencing. These new rates will be effective on samples submitted after April 1, 2010. Samples already in the queue will use the current rates.

ILLUMINA SEQUENCING MIT - current MIT - April 1, 2010 unit Notes
Single End (36nt) $805 $860 per lane inlcudes quality control (RT-PCR or BioAnalyzer), sequencing, genome alignment and data storage of Firecrest files for 2 yrs.
Paired End (36+36nt) $1,385 $1,450 per lane
Add'l 36nt $295 $300 per lane
Sample Multiplexing $0 $50 per 10 samples combined Combined over the whole order. Only applies to samples combined by BCM technicians.
Repriming $200 $300 per flow cell Uses 6nt. Cost is divided by number of lanes requiring repriming. Repriming is required for standard Illumina multiplexing.


Non-MIT rates are 30% higher for academic institutions and 50% highers for non-academic institutions. Priority is given to samples from CORE facilities.


RECENT & UPCOMING CHANGES

Illumina/Solexa Sequencing -- *New*
New Affymetrix labeling -- *New*
Notes from the ABRF
Tecan EVO high-throughput -- Training Feb 12, 2009
BioMicro Center Renovation -- Coming Feb '09


PREVIOUS NEWSLETTERS

2009
May
January / February
2008
December
November


RECENT CHANGES TO THE WEBSITE <\BIG><\B>

18 April 2018

     20:43 

X-Lab‎‎ (4 changes | history) . . (0). . [ChanEngr‎ (4×)]

     

20:43

(cur | prev) . . (0). . ChanEngr (talk | contribs)

     

20:38

(cur | prev) . . (0). . ChanEngr (talk | contribs)

     

20:36

(cur | prev) . . (0). . ChanEngr (talk | contribs)

     

20:35

(cur | prev) . . (0). . ChanEngr (talk | contribs)

 m   16:47 

User:Korey Griffin‎‎ (2 changes | history) . . (+32). . [Korey Griffin‎ (2×)]

 m   

16:47

(cur | prev) . . (-47). . Korey Griffin (talk | contribs) (Contact)

 m   

11:03

(cur | prev) . . (+79). . Korey Griffin (talk | contribs) (Empirical Resources)

     15:21 

User:Johannes Stuttmann‎‎ (3 changes | history) . . (+4,407). . [Johannes Stuttmann‎ (3×)]

     

15:21

(cur | prev) . . (+1,692). . Johannes Stuttmann (talk | contribs)

     

14:42

(cur | prev) . . (+2,470). . Johannes Stuttmann (talk | contribs)

     

13:09

(cur | prev) . . (+245). . Johannes Stuttmann (talk | contribs)

     13:02  Hydrochloric acid‎ (diff | hist) . . (+1). . Yar (talk | contribs) (typing error from user email)

     12:52 

(User creation log). .

[Yar‎ (2×)]

     

12:52

. . User account Ally B (talk | contribs) was created by Yar (talk | contribs) and password was sent by email ‎

     

12:52

. . User account Jakob (talk | contribs) was created by Yar (talk | contribs) and password was sent by email ‎

N    12:46 

BIOL478/S18:Microarray Data Analysis‎‎ (24 changes | history) . . (+34,776). . [Kam D. Dahlquist‎ (24×)]

     

12:46

(cur | prev) . . (-70). . Kam D. Dahlquist (talk | contribs) (Gridding and Generating Intensity Data: remove old Brightspace link)

     

12:45

(cur | prev) . . (+1). . Kam D. Dahlquist (talk | contribs) (GenePix Pro Protocol (Steps 1-3): fix Brightspace link to raw data)

     

12:16

(cur | prev) . . (+1,241). . Kam D. Dahlquist (talk | contribs) (Before We Begin: add section on lab notebook)

     

12:04

(cur | prev) . . (0). . Kam D. Dahlquist (talk | contribs) (Background: fix list formatting)

     

12:03

(cur | prev) . . (+108). . Kam D. Dahlquist (talk | contribs) (Background: add GRNsight)

     

12:02

(cur | prev) . . (+3,845). . Kam D. Dahlquist (talk | contribs) (Identifying regulatory transcription factors responsible for observed changes in gene expression (step 10): paste in GRNsight instructions)

     

12:00

(cur | prev) . . (+3,072). . Kam D. Dahlquist (talk | contribs) (Identifying regulatory transcription factors responsible for observed changes in gene expression (step 10): paste in protocol from Biomath modeling, modify for HMO1)

     

11:56

(cur | prev) . . (+114). . Kam D. Dahlquist (talk | contribs) (Clustering and GO Term Enrichment with stem (steps 7-8): add section for step 10)

     

11:55

(cur | prev) . . (-751). . Kam D. Dahlquist (talk | contribs) (Clustering and GO Term Enrichment with stem (steps 7-8): delete comment, emphasize to unzip)

     

11:52

(cur | prev) . . (0). . Kam D. Dahlquist (talk | contribs) (Modified t test for each timepoint: fix formula)

     

11:29

(cur | prev) . . (+52). . Kam D. Dahlquist (talk | contribs) (Sanity Check: Number of genes significantly changed: add label to link)

     

11:29

(cur | prev) . . (+29). . Kam D. Dahlquist (talk | contribs) (Sanity Check: Number of genes significantly changed: add link to xkcd comic)

     

11:25

(cur | prev) . . (-360). . Kam D. Dahlquist (talk | contribs) (replace opi1 with hmo1)

     

11:24

(cur | prev) . . (+18). . Kam D. Dahlquist (talk | contribs) (replace wt with dHMO1)

     

11:22

(cur | prev) . . (+36). . Kam D. Dahlquist (talk | contribs) (Modified t test for each timepoint: replace wt with dHMO1)

     

11:20

(cur | prev) . . (-22). . Kam D. Dahlquist (talk | contribs) (Looking at the raw data: fix links to SGD)

     

11:18

(cur | prev) . . (+3). . Kam D. Dahlquist (talk | contribs) (Downloading the Data: change to hmo1)

     

11:07

(cur | prev) . . (+35). . Kam D. Dahlquist (talk | contribs) (Statistical Analysis (Step 6): change to delta-hmo1)

     

10:35

(cur | prev) . . (+61). . Kam D. Dahlquist (talk | contribs) (GenePix Pro Protocol (Steps 1-3): note that this will be demo'd, change opi1 to hmo1)

     

10:33

(cur | prev) . . (+27). . Kam D. Dahlquist (talk | contribs) (Background: steps 1-3 done for you)

     

10:32

(cur | prev) . . (+74). . Kam D. Dahlquist (talk | contribs) (Background: add link for YEASTRACT)

     

10:30

(cur | prev) . . (+15). . Kam D. Dahlquist (talk | contribs) (change dates, mention of Windows 10)

     

10:26

(cur | prev) . . (+27,230). . Kam D. Dahlquist (talk | contribs) (paste in from S18)

N    

10:26

(cur | prev) . . (+18). . Kam D. Dahlquist (talk | contribs) (create page with under construction flag)

     10:27  Dahlquist:Protocols‎ (diff | hist) . . (+152). . Kam D. Dahlquist (talk | contribs) (Dry Lab Protocols: create link to BIOL 478 Spring 2018 protocol)

     09:43 

Crosby:Lab Members‎‎ (2 changes | history) . . (+41). . [Mohammad H. Dezfulian‎ (2×)]

     

09:43

(cur | prev) . . (+71). . Mohammad H. Dezfulian (talk | contribs) (Recent Alumni)

     

09:41

(cur | prev) . . (-30). . Mohammad H. Dezfulian (talk | contribs) (Graduate Students)

     08:35  CAMRI:SeminarSeries‎ (diff | hist) . . (+62). . Lexi E. Crommett (talk | contribs)
     08:00 (Upload log) . . Reinca (talk | contribs) uploaded File:FinalView2.JPG
     01:58  User:Timothee Flutre‎ (diff | hist) . . (+141). . Timothee Flutre (talk | contribs) (Links: add open data repos)

17 April 2018

     23:41  BME100 s2018:Group7 W1030 L6‎ (diff | hist) . . (+454). . Dragos (talk | contribs) (Intro to Computer-Aided Design)

     23:23 

BME100 s2018:Group8 W0800 L6‎‎ (3 changes | history) . . (+601). . [Leaverjill‎ (3×)]

     

23:23

(cur | prev) . . (+293). . Leaverjill (talk | contribs) (Feature 2: Hardware - PCR Machine & Fluorimeter)

     

23:20

(cur | prev) . . (+1). . Leaverjill (talk | contribs) (Bayesian Statistics)

     

23:19

(cur | prev) . . (+307). . Leaverjill (talk | contribs) (Feature 2: Hardware - PCR Machine & Fluorimeter)

     23:22  BME100 s2018:Group1 W1030 L6‎ (diff | hist) . . (+8). . Erik Halsband (talk | contribs) (Intro to Computer-Aided Design)
     23:18 (Upload log) . . Erik Halsband (talk | contribs) uploaded a new version of File:ClosedFlourimeter.JPG(Re-rendered with updated walls.)

     23:17 

BME100 s2018:Group1 W0800 L6‎‎ (2 changes | history) . . (+4). . [Yaroomba‎ (2×)]

     

23:17

(cur | prev) . . (+2). . Yaroomba (talk | contribs) (Feature 2)

     

23:17

(cur | prev) . . (+2). . Yaroomba (talk | contribs) (Feature 1)