Difference between revisions of "BioMicroCenter"

From OpenWetWare
Jump to: navigation, search
 
(31 intermediate revisions by 6 users not shown)
Line 1: Line 1:
 
<h2 align="center"> Welcome to the MIT BioMicro Center! </h2>
 
<h2 align="center"> Welcome to the MIT BioMicro Center! </h2>
 +
The '''MIT BioMicro Center''' is an integrated genomics facility that provides both expertise and equipment for systems biology. The core has significant resources in microarrays, next generation sequencing and in high throughput screening as well as bioinformatics and BioIT. The Center is a joint endeavor between the [http://biology.mit.edu Department of Biology], the [http://ki.mit.edu Koch Institute for Integrative Cancer Research] (Genomics Core and Bioinformatics and Computing Core), the [http://web.mit.edu/be Department of Biological Engineering]  and the [http://cehs.mit.edu MIT Center for Environmental Health Sciences] (Genomics and Informatics Facilities Core).
 +
<BR><BR>
 
{| width="100%"  
 
{| width="100%"  
 
  |- valign="top"
 
  |- valign="top"
 
  |rowspan=3 width="33%"|
 
  |rowspan=3 width="33%"|
 
  {|
 
  {|
   |[[Image:BMC_frontpage.jpg|center]]
+
   |[[Image:BMC_Logo_Large.png|300px|center]]
 
  |}
 
  |}
 
  |align="center" width="33%" style="background-color:transparent; border:1px solid purple; height:150px;"|
 
  |align="center" width="33%" style="background-color:transparent; border:1px solid purple; height:150px;"|
Line 10: Line 12:
 
   |valign="top" width="10%" align="left" height="145px"|
 
   |valign="top" width="10%" align="left" height="145px"|
 
<BIG><B> The BioMicro Center </B></BIG>
 
<BIG><B> The BioMicro Center </B></BIG>
* [[BioMicroCenter:News|'''News''']]
+
* [[BioMicroCenter:News|'''News & General Information''']]
* [[BioMicroCenter:People| Staff]]
+
* [[BioMicroCenter:People| Staff]] <!--/ [[BioMicroCenter:Jobs|Positions Available]]-->
 +
* [[BioMicroCenter:Forms|Sample Submission Forms and Scheduling]]  
 
* [[BioMicroCenter:Pricing|Pricing]]
 
* [[BioMicroCenter:Pricing|Pricing]]
* [[BioMicroCenter:Forms|Sample Submission Forms and Scheduling]]
+
* [[BioMicroCenter:Research| Research]]
 +
* [[BioMicroCenter:Technology_Seminar_Series| Technology Seminar Series]]
 
* [[BioMicroCenter:FAQ|FAQs]]
 
* [[BioMicroCenter:FAQ|FAQs]]
 +
[http://biocenter.private.openwetware.org/wiki/BioMicroCenter ''BMC Internal site'']
 
  |}
 
  |}
 
  |align="center" width="33%" style="background-color:transparent; border:1px solid purple; height:150px;"|
 
  |align="center" width="33%" style="background-color:transparent; border:1px solid purple; height:150px;"|
 
  {|
 
  {|
 
   |valign="top" width="10%" align="left" height="145px"|
 
   |valign="top" width="10%" align="left" height="145px"|
<BIG><B> Genomics </B></BIG>
+
<BIG><B> Genomic Technologies </B></BIG>
* [[BioMicroCenter:Sequencing|Illumina Sequencing]]  
+
* [[BioMicroCenter:Sequencing|Illumina Sequencing]] (HiSeq, NextSeq, MiSeq)
* [[BioMicroCenter:Illumina_Library_Preparation|Illumina Sample Preparation]]
+
 
* [[BioMicroCenter:ChIP|Chromatin Immunoprecipitation]]
+
* [[BioMicroCenter:Microarrays| Agilent and Affymetrix Microarrays]]
* [[BioMicroCenter:Microarrays| Microarrays]]
+
* [[BioMicroCenter:PacBio| PacBio Sequencing]] via U.Mass Medical Deep Sequencing Core Facility
 
  |}
 
  |}
 
  |- valign="top"
 
  |- valign="top"
Line 29: Line 34:
 
  {|
 
  {|
 
   |valign="top" width="10%" align="left" height="145px"|
 
   |valign="top" width="10%" align="left" height="145px"|
<BIG><B> Screening Services </B></BIG>
+
<BIG><B> High Throughput </B></BIG>
* [[BioMicroCenter:Tecan Freedom Evo|Automated Liquid Handling]]  
+
* [[BioMicroCenter:Tecan Freedom Evo|Liquid Handlers (TecanEVO)]]
* [[BioMicroCenter:Varioskan| Plate Reading]]  
+
* Plate Readers ([[Koch_HTS_Facility:Instrumentation|Tecan M1000]][[image:Ki_small.jpg]] / [[BioMicroCenter:Varioskan| Varioskan)]]
 +
* [http://cehs.mit.edu/facilities.html#Genomics_and_Bioinformatics_Core Arrayscan Screening Microscope[[Image:CEHS_small.gif]]] <br> [[Koch_HTS_Facility:Instrumentation| ...with Confocal Capability]][[image:Ki_small.jpg]]
 +
* [[Koch_HTS_Facility:Instrumentation|Bl2+ Lentiviral shRNA Screening Platform]][[image:Ki_small.jpg]]
 +
* [[Koch_HTS_Facility:Libraries|Lentiviral]] and [[Koch_HTS_Facility:Libraries|Small Molecule]] Libraries[[image:Ki_small.jpg]]
 +
<!-- * [[BioMicroCenter:RTPCR|Fluidigm Biomark]] high throughput qPCR system- *UNAVAILABLE- Contact BMC for details* -->
 
  |}
 
  |}
 
  |align="center" width="33%" style="background-color:transparent; border:1px solid purple; height:150px;"|
 
  |align="center" width="33%" style="background-color:transparent; border:1px solid purple; height:150px;"|
 
  {|
 
  {|
 
   |valign="top" width="10%" align="left" height="145px"|
 
   |valign="top" width="10%" align="left" height="145px"|
<BIG><B> Other Services </B></BIG>
+
<BIG><B> Illumina Library Services </B></BIG>
* [[BioMicroCenter:RTPCR|Fluidigm BioMark System]]
+
* [[BioMicroCenter:Illumina_Library_Preparation|Illumina Sample Preparation]]
* [[BioMicroCenter:RTPCR#Traditional_Real_Time_PCR| PCR and RT-PCR]]
+
** Standard Methods for [[BioMicroCenter:DNA_LIB| *DNA* ]] [[BioMicroCenter:RNA_LIB| *RNA* ]]
* [[BioMicroCenter:2100BioAnalyzer|BioAnalyzer]]
+
** High Throughput Methods for [[BioMicroCenter:DNA_HTL| *DNA* ]]  [[BioMicroCenter:RNA_HTL| *RNA* ]]
* [[BioMicroCenter:Advanced analytical Fragment analyzer|Advanced analytical Fragment analyzer]]
+
* [[BioMicroCenter:SingleCell|Single Cell RNAseq]]
* [[BioMicroCenter:PippinPrep|Pippen Prep automated electrophoresis system]]
+
* [[BioMicroCenter:ChIP|Chromatin Immunoprecipitation]]
 +
* [[BioMicroCenter:PippinPrep|Pippin Prep automated electrophoresis system]]
 +
* [[BioMicroCenter:Covaris|Covaris E220 Focused-ultrasonicator]]
 +
 
 +
 
 +
 
 
  |}
 
  |}
 
  |- valign="top"  
 
  |- valign="top"  
Line 47: Line 61:
 
  {|
 
  {|
 
   |valign="top" width="10%" align="left" height="145px"|
 
   |valign="top" width="10%" align="left" height="145px"|
<BIG><B> [[BioMicroCenter:Computing|Informatics and BioIT]] </B></BIG>
+
<BIG><B> [[BioMicroCenter:Computing|Bioinformatics and BioIT]] </B></BIG>
 
* [[BioMicroCenter:BioInformaticsStaff|Bioinformatic Consulting]]
 
* [[BioMicroCenter:BioInformaticsStaff|Bioinformatic Consulting]]
 
* [[BioMicroCenter:Computing#HARDWARE|Servers]]
 
* [[BioMicroCenter:Computing#HARDWARE|Servers]]
Line 53: Line 67:
 
* [[BioMicroCenter:BioinfoClasses|Mini Courses]]
 
* [[BioMicroCenter:BioinfoClasses|Mini Courses]]
 
* [[BioMicroCenter:BIG_meeting|BIG meeting Schedule]]
 
* [[BioMicroCenter:BIG_meeting|BIG meeting Schedule]]
 +
* [https://mit-ki.ilabsolutions.com/sc/3189/bioinformatics-and-computing-core?tab=services Poster Printing [[Image:Ki small.jpg]]]
 
  |}  
 
  |}  
 
  |align="center" width="33%" style="background-color:transparent; border:1px solid purple; height:150px;"|
 
  |align="center" width="33%" style="background-color:transparent; border:1px solid purple; height:150px;"|
 
  {|
 
  {|
 
   |valign="top" width="10%" align="left" height="145px"|
 
   |valign="top" width="10%" align="left" height="145px"|
<BIG><B> Useful Links </B></BIG>
+
<BIG><B> Other Services </B></BIG>
* [[BioMicroCenter:Links| Resources]]  
+
* [[BioMicroCenter:RTPCR#Traditional_Real_Time_PCR| PCR and RT-PCR]]
* [[BioMicroCenter:Protocols| Protocols]]  
+
* [[BioMicroCenter:2100BioAnalyzer|BioAnalyzer]] / [[BioMicroCenter:Advanced analytical Fragment analyzer|AATI Fragment Analyzer]] / [[BioMicroCenter:FemtoPulse|Femto Pulse]]
* [[BioMicroCenter:Research| Research]]
+
* [[BioMicroCenter:BioPlex3d|BioRad BioPlex3D Luminex Platform]]
 +
* [http://cehs.mit.edu/facilities.html#Genomics_and_Bioinformatics_Core Compucyte Scanning Cytometer [[Image:CEHS_small.gif]]]
 +
* [http://cehs.mit.edu/facilities.html#Genomics_and_Bioinformatics_Core Accuri C6 Flow Cytometer[[Image:CEHS_small.gif]]]
 +
* [http://cehs.mit.edu/facilities.html#Genomics_and_Bioinformatics_Core Typhoon FLA7000 [[Image:CEHS_small.gif]]]
 
* [http://mailman.mit.edu:/mailman/listinfo/biostuff biostuff mailing list]
 
* [http://mailman.mit.edu:/mailman/listinfo/biostuff biostuff mailing list]
* [http://biocenter.private.openwetware.org/wiki/BioMicroCenter BMC Internal site]
+
 
* [[BioMicroCenter:Technology Seminar Series| Technology Seminar Series]]
 
  
 
  |}
 
  |}
 
|}
 
|}
 
<h2 align="center">  </h2>
 
<h2 align="center">  </h2>
 +
<h2 align="center"> [http://whereis.mit.edu 68-316] ---- biomicro@mit.edu ---- 617-715-4533  </h2>
 +
 +
 +
[[Image:Ki_small.jpg]] - Denotes services available through the KI Genomics Core in the High Throughput Facility located in 76-047 or in the KI Bioinformatics and Computing Core in 76-189 and are not directly part of the BioMicro Center.<BR>
 +
[[Image:CEHS_small.gif]] - Denotes services available through the CEHS Genomics and Imaging Facilities Core and are not directly a part of the BioMicro Center.<BR>
 +
Some additional services are arranges as collaborations with the Whitehead Genomics Technology Core and the Umass Medical Deep Sequencing Core.

Latest revision as of 07:17, 3 November 2017

Welcome to the MIT BioMicro Center!

The MIT BioMicro Center is an integrated genomics facility that provides both expertise and equipment for systems biology. The core has significant resources in microarrays, next generation sequencing and in high throughput screening as well as bioinformatics and BioIT. The Center is a joint endeavor between the Department of Biology, the Koch Institute for Integrative Cancer Research (Genomics Core and Bioinformatics and Computing Core), the Department of Biological Engineering and the MIT Center for Environmental Health Sciences (Genomics and Informatics Facilities Core).

BMC Logo Large.png

The BioMicro Center

BMC Internal site

Genomic Technologies

High Throughput

Illumina Library Services


Bioinformatics and BioIT

Other Services


68-316 ---- biomicro@mit.edu ---- 617-715-4533


Ki small.jpg - Denotes services available through the KI Genomics Core in the High Throughput Facility located in 76-047 or in the KI Bioinformatics and Computing Core in 76-189 and are not directly part of the BioMicro Center.
CEHS small.gif - Denotes services available through the CEHS Genomics and Imaging Facilities Core and are not directly a part of the BioMicro Center.
Some additional services are arranges as collaborations with the Whitehead Genomics Technology Core and the Umass Medical Deep Sequencing Core.