Difference between revisions of "Beauchamp:Lab Notebook"

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#[[Beauchamp:fMRIOverview|Overview of fMRI Analysis]]
#[[Beauchamp:fMRIOverview|Overview of fMRI Analysis]]
#[[Beauchamp:Software_Installation|Software Information Page]]
#[[Beauchamp:MotionCorrection|Motion and Distortion Correction]]
#[[Beauchamp:MotionCorrection|Motion and Distortion Correction]]
#[[Beauchamp:Autism|Autism Data]]
#[[Beauchamp:Autism|Autism Data]]

Revision as of 14:09, 27 August 2010

Brain picture
Beauchamp Lab

General Notes

  1. How To Install Software and set up new computers
  2. How To order things for the lab

Subject Forms

  1. Information for Subjects


  1. Overview of fMRI Analysis
  2. Motion and Distortion Correction
  3. Autism Data
  4. Finding Distances on the Surface
  5. Finding Closest node on the Surface
  6. Creating AFNI BRIKs from MR Data
  7. Preparation for Creating Cortical Surface Models
  8. Creating Cortical Surface Models
  9. Using Cortical Surface Models
  10. What If a Cortical Surface Model Exists Already
  11. What If Cortical Surface Model Looks Bad
  12. Creating Standardized Surface Models
  13. FreeSurfer Standard Surface Models
  14. Creating Volume Average Datasets with AFNI
  15. Processing Diffusion Tensor Imaging Data
  16. Automatic VOI Initialization for Interactive Tractography
  17. Deterministic Tractography Constrained by Image Masks
  18. AFNI
  19. SUMA
  20. Free Surfer
  21. Caret
  22. Scanner Stimulus and Eye Tracker Setup
  23. Retinotopic Mapping
  24. AFNI Atlas Values
  25. Tactile Experiment Notes
  26. MVPA Notes
  27. RealTimefMRI
  28. Notes on analyzing MRI data (old)


  1. Notes on TMS


  1. Electrode Localization and Naming
  2. Electrophysiology Protocols
  3. Analyzing ECoG data (by Adam Burch)


  1. New Auditory Tactile Experiment
  2. d' (d-prime) Analysis
  3. Race Model Analysis


McGurk Stimuli

McGurk Stimuli