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<html> <?xml version="1.0" encoding="utf-8"?> <rss version="0.92"> <channel> <title>Library2.bib</title> <link>file://localhost/Users/Barry/Library/texmf/bibtex/Library2.bib</link> <description>BibTeX Bibliography</description> <language>en</language> <copyright>Copyright 2006</copyright> <editor></editor> <lastBuildDate>Tue, 01 Aug 2006 14:23:23 -0400</lastBuildDate> <item> <pubDate></pubDate> <title>Proteomic profiling of recombinant Escherichia coli in high-cell-density fermentations for improved production of an antibody fragment biopharmaceutical.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Roles and applications of small heat shock proteins in the production of recombinant proteins in Escherichia coli.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Stationary phase protein overproduction is a fundamental capability of Escherichia coli.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Role of the general stress response during strong overexpression of a heterologous gene in Escherichia coli.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Genomic analysis of high-cell-density recombinant Escherichia coli fermentation and "cell conditioning" for improved recombinant protein yield.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Monitoring of genes that respond to overproduction of an insoluble recombinant protein in Escherichia coli glucose-limited fed-batch fermentations.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>DNA microarray detection of metabolic responses to protein overproduction in Escherichia coli.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Effects of plasmid presence on growth and enzyme activity of Escherichia coli DH5Î$\pm$</title> <description></description> <link>http://dx.doi.org/10.1007/BF00164823</link> </item> <item> <pubDate></pubDate> <title>T7 RNA polymerase-dependent expression of COXII in yeast mitochondria.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Plasmid presence changes the relative levels of many host cell proteins and ribosome components in recombinant <I>Escherichia coli</I></title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Effects of recombinant plasmid content on growth properties and cloned gene product formation in <I>Escherichia coli</I></title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Plasmid-encoded protein: The principal factor in the ?metabolic burden? associated with recombinant bacteria</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Host-vector interactions in Escherichia coli.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Conversion of the Vibrio fischeri transcriptional activator, LuxR, to a repressor.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Recombinant protein expression in high cell density fed-batch cultures of Escherichia coli.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>A fluctuation method to quantify in vivo fluorescence data</title> <description></description> <link>http://www.hubmed.org/display.cgi?uids=16648159</link> </item> <item> <pubDate></pubDate> <title>Feedback control of ribosome synthesis in Escherichia coli is dependent on eight critical amino acids</title> <description></description> <link>http://www.hubmed.org/display.cgi?uids=16675089</link> </item> <item> <pubDate></pubDate> <title>Tuning genetic control through promoter engineering</title> <description></description> <link>http://www.hubmed.org/display.cgi?uids=16123130</link> </item> <item> <pubDate></pubDate> <title>An excitable gene regulatory circuit induces transient cellular differentiation.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>FACS-optimized mutants of the green fluorescent protein (GFP).</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Analogs of the autoinducer of bioluminescence in Vibrio fischeri.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Detection, purification, and structural elucidation of the acylhomoserine lactone inducer of Vibrio fischeri luminescence and other related molecules.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Quorum sensing in Vibrio fischeri: probing autoinducer-LuxR interactions with autoinducer analogs.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>N-acyl homoserinelactone-mediated gene regulation in gram-negative bacteria.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>gfp-based N-acyl homoserine-lactone sensor systems for detection of bacterial communication.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Effect of sdiA on biosensors of N-acylhomoserine lactones.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>The LuxR receptor: the sites of interaction with quorum-sensing signals and inhibitors.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>N-acyl-L-homoserine lactone signal interception by Escherichia coli.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Emergent Properties of Reduced-Genome Escherichia coli.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>DNA uptake in bacteria.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Intracellular compartmentation in planctomycetes.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Linearly concatenated cyclobutane lipids form a dense bacterial membrane.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Identification of organelles in bacteria similar to acidocalcisomes of unicellular eukaryotes.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Bacterial growth inhibition by overproduction of protein.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Characterization of stress and protein turnover from protein overexpression in fed-batch E. coli cultures.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>A single base change in the Shine-Dalgarno region of 16S rRNA of Escherichia coli affects translation of many proteins.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Structured model to predict intracellular amino acid shortages during recombinant protein overexpression in E. coli</title> <description></description> <link>http://www.sciencedirect.com/science/article/B6T3C-44R2R8C-1/2/6114b21c1cc20f70fd039774ced89e08</link> </item> <item> <pubDate></pubDate> <title>Modeling of the controlled expression of a harmful protein by a three-plasmid harboring system.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Reaction pathways in transcript elongation.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Sequence-dependent kinetic model for transcription elongation by RNA polymerase.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Mathematical modeling and analysis in biochemical engineering: past accomplishments and future opportunities.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Improved cloning efficiency of polymerase chain reaction (PCR) products after proteinase K digestion.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Preparation and storage of competent Escherichia coli cells</title> <description></description> <link>http://www.sciencedirect.com/science/article/B7CV2-4B4209M-J5/2/9bc8c91fb6cfb2812bbf3fdb8d5b62c0</link> </item> <item> <pubDate></pubDate> <title>Analysis of growth rate effects on productivity of recombinant Escherichia coli populations using molecular mechanism models.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Cellular logic with orthogonal ribosomes.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Engineered riboregulators enable post-transcriptional control of gene expression.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAs.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Transcribing of Escherichia coli genes with mutant T7 RNA polymerases: stability of lacZ mRNA inversely correlates with polymerase speed.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>A network of orthogonal ribosome[middot]mRNA pairs</title> <description></description> <link>http://dx.doi.org/10.1038/nchembio719</link> </item> <item> <pubDate></pubDate> <title>The efficiency of promoter clearance distinguishes T7 class II and class III promoters.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Translational standby sites: how ribosomes may deal with the rapid folding kinetics of mRNA.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Secondary structure of the ribosome binding site determines translational efficiency: a quantitative analysis.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Escherichia coli and Salmonella: Cellular and Molecular Biology</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Escherichia coli and Salmonella: Cellular and Molecular Biology</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>A synthetic multicellular system for programmed pattern formation.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Programmed population control by cell-cell communication and regulated killing</title> <description></description> <link>http://dx.doi.org/10.1038/nature02491</link> </item> <item> <pubDate></pubDate> <title>PL of coliphage lambda: an alternative solution for an efficient promoter.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Transcriptional response of Escherichia coli to temperature shift.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Compared tolerance to osmotic stress in various microorganisms: Towards a survival prediction test.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Cell-to-cell signalling in Escherichia coli and Salmonella enterica.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Reversible acyl-homoserine lactone binding to purified Vibrio fischeri LuxR protein.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Quorum sensing in Vibrio fischeri: analysis of the LuxR DNA binding region by alanine-scanning mutagenesis.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>RNA polymerases from Bacillus subtilis and Escherichia coli differ in recognition of regulatory signals in vitro.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>"Host shutoff" function of bacteriophage T7: involvement of T7 gene 2 and gene 0.7 in the inactivation of Escherichia coli RNA polymerase.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Quorum sensing in bacteria: the LuxR-LuxI family of cell density-responsive transcriptional regulators.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Evidence that the N-terminal region of the Vibrio fischeri LuxR protein constitutes an autoinducer-binding domain.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Active efflux and diffusion are involved in transport of Pseudomonas aeruginosa cell-to-cell signals.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>The Vibrio fischeri luminescence gene activator LuxR is a membrane-associated protein.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Analysis of growth rate effects on productivity of recombinant Escherichia coli populations using molecular mechanism models. Reprinted from Biotechnology and Bioengineering, Vol. 26, Issue 1, Pages 66-73 (1984).</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Complex biology with no parameters.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Real-time RNA profiling within a single bacterium.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>A regulatory trade-off as a source of strain variation in the species Escherichia coli.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Fluorescence correlation spectrometry of the interaction kinetics of tetramethylrhodamin [alpha]-bungarotoxin with Torpedo californica acetylcholine receptor</title> <description></description> <link>http://www.sciencedirect.com/science/article/B6TFB-43YT7T7-1/2/06f79117db7878a14c6a125b578a6de2</link> </item> <item> <pubDate></pubDate> <title>Long-term and homogeneous regulation of the Escherichia coli araBAD promoter by use of a lactose transporter of relaxed specificity.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Quantitative analysis of ribosome binding sites in E.coli.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Effects of carriage and expression of the Tn10 tetracycline-resistance operon on the fitness of Escherichia coli K12.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Green fluorescent protein purification by organic extraction.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Signal transduction: molecular monogamy.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Is modification sufficient to protect a bacterial chromosome from a resident restriction endonuclease?</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Genetic analysis of the Shine-Dalgarno interaction: selection of alternative functional mRNA-rRNA combinations.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Definition of the Escherichia coli MC4100 genome by use of a DNA array.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Host specificity of DNA produced by Escherichia coli: bacterial mutations affecting the restriction and modification of DNA.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Mutants of initiator tRNA that function both as initiators and elongators.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Formation of the central pseudoknot in 16S rRNA is essential for initiation of translation.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Construction and analysis of luxCDABE-based plasmid sensors for investigating N-acyl homoserine lactone-mediated quorum sensing.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>The specificity loop of T7 RNA polymerase interacts first with the promoter and then with the elongating transcript, suggesting a mechanism for promoter clearance.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Methylglyoxal, an endogenous aldehyde, crosslinks DNA polymerase and the substrate DNA</title> <description></description> <link>http://nar.oxfordjournals.org/cgi/content/abstract/29/16/3433</link> </item> <item> <pubDate></pubDate> <title>Initiation factor IF 2 binds to the alpha-sarcin loop and helix 89 of Escherichia coli 23S ribosomal RNA.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Binding of Escherichia coli initiation factor IF2 to 30S ribosomal subunits: a functional role for the N-terminus of the factor.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Anticodon sequence mutants of Escherichia coli initiator tRNA: effects of overproduction of aminoacyl-tRNA synthetases, methionyl-tRNA formyltransferase, and initiation factor 2 on activity in initiation.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Thin-layer chromatographic methods to isolate 32P-labeled 5-phosphoribosyl-alpha-1-pyrophosphate (PRPP): determination of cellular PRPP pools and assay of PRPP synthetase activity.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Measuring control of transcription initiation by changing concentrations of nucleotides and their derivatives.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Interspecies communication in bacteria.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>The structure of the zinc finger domain from human splicing factor ZNF265 fold.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Generation of an AraC-araBAD promoter-regulated T7 expression system.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Culture medium for enterobacteria.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Residual guanosine 3',5'-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Analysis of sequence elements important for the synthesis and control of ribosomal RNA in E coli.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Properties of a bacterial mutant lacking amino acid control of RNA synthesis.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Regulated expression of foreign genes in mammalian cells under the control of coliphage T3 RNA polymerase and lac repressor.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Eukaryotic transient-expression system based on recombinant vaccinia virus that synthesizes bacteriophage T7 RNA polymerase.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Synthesis of proteins in Escherichia coli is limited by the concentration of free ribosomes. Expression from reporter genes does not always reflect functional mRNA levels.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Translation initiation in Escherichia coli: sequences within the ribosome-binding site.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>The use of a tRNA as a transcriptional reporter: the T7 late promoter is extremely efficient in Escherichia coli but its transcripts are poorly expressed.</title> <description></description> <link>https://ca2.mit.edu/fcgi-bin/ca?page=getmozcert&uid=195290047-34940</link> </item> <item> <pubDate></pubDate> <title>Hierarchies of base pair preferences in the P22 ant promoter.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>The effects of mutations in the ant promoter of phage P22 depend on context.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Compilation and analysis of Escherichia coli promoter DNA sequences.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Modulating substrate choice: the SspB adaptor delivers a regulator of the extracytoplasmic-stress response to the AAA+ protease ClpXP for degradation.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Retroregulation of the synthesis of ribosomal proteins L14 and L24 by feedback repressor S8 in Escherichia coli.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Recombineering: a powerful new tool for mouse functional genomics.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Phage RNA polymerase vectors that allow efficient gene expression in both prokaryotic and eukaryotic cells.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Over-expression of Escherichia coli F1Fo-ATPase subunit a is inhibited by instability of the uncB gene transcript</title> <description></description> <link>http://www.sciencedirect.com/science/article/B6T36-48W8VTB-K/2/005eec3f6490ac69545d4abb210202d5</link> </item> <item> <pubDate></pubDate> <title>Effect of increased ppGpp concentration on DNA replication of different replicons in Escherichia coli.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Monitoring of Stress Responses</title> <description></description> <link>http://www.springerlink.com/openurl.asp?genre=article%5C&%20id=doi:10.1007/b93993</link> </item> <item> <pubDate></pubDate> <title>Molecular Components of Physiological Stress Responses in Escherichia coli</title> <description></description> <link>http://www.springerlink.com/openurl.asp?genre=article%5C&%20id=doi:10.1007/b93957</link> </item> <item> <pubDate></pubDate> <title>Stress Induced by Recombinant Protein Production in Escherichia coli</title> <description></description> <link>http://www.springerlink.com/openurl.asp?genre=article%5C&%20id=doi:10.1007/b93994</link> </item> <item> <pubDate></pubDate> <title>Co-overexpression of folding modulators improves the solubility of the recombinant guinea pig liver transglutaminase expressed in Escherichia coli.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>tRNA-assisted overproduction of eukaryotic ribosomal proteins.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Directing ribosomes to a single mRNA species: a method to study ribosomal RNA mutations and their effects on translation of a single messenger in Escherichia coli.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Specialized ribosome system: preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Modulation of gene expression from the arabinose-inducible araBAD promoter.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Use of bacteriophage T7 lysozyme to improve an inducible T7 expression system.</title> <description></description> <link></link> </item> <item> <pubDate></pubDate> <title>Mechanism of inhibition of bacteriophage T7 RNA polymerase by T7 lysozyme.</title> <description></description> <link></link> </item> <item> 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