Difference between revisions of "Banta:Publications"

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Revision as of 15:49, 23 June 2009

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Banta Lab

Protein and Metabolic Engineering

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Recent Lab News

9/2017 A paper entitled “Block V RTX domain of adenylate cyclase from Bordetella pertussis: A conformationally dynamic scaffold for protein engineering applications” by Bulutoglu and Banta was published in Toxins as an Invited Review for the Special Issue: Adenylate Cyclase (CyaA) Toxin

9/2017 A paper entitled “Catch and release: Engineered allosterically-regulated β-roll peptides enable on/off biomolecular recognition” by Bulutoglu, Dooley, Szilvay, Blenner and Banta was published in ACS Synthetic Biology.

9/2017 A paper entitled “Block V RTX domain of adenylate cyclase from Bordetella pertussis: A conformationally dynamic scaffold for protein engineering applications” by Bulutoglu and Banta was published in Toxins as an Invited Review for the Special Issue: Adenylate Cyclase (CyaA) Toxin.

9/2017 Congratulations to Yuta Inaba for passing his qualifying exam!

8/2017 Harun Ozbakir successfully defended his PhD thesis, the fifteenth from the Banta group. His thesis was entitled "Engineering Electron Transfer Processes in Oxidoreductases: Applications in Biocatalysis". Congratulations Dr. Ozbakir!

8/2017 Professor Banta and Professor Jin Montclare of NYU co-organized a 2 day Symposium consisting of 4 sessions entitled "Recombinant Type Materials" at the 254th National Meeting of the American Chemical Society in Washington, DC. Professor Banta gave a presentation at the Symposium entitled “Engineering the Calcium-Regulated β-Roll Peptide for Biomaterials Applications”.


See our full news page for older news



Publications

  1. Simon MJ, Gao S, Kang WH, Banta S, and Morrison B 3rd. TAT-mediated intracellular protein delivery to primary brain cells is dependent on glycosaminoglycan expression. Biotechnol Bioeng. 2009 Sep 1;104(1):10-9. DOI:10.1002/bit.22377 | PubMed ID:19449355 | HubMed [Paper22]
  2. Chockalingam K, Lu HD, and Banta S. Development of a bacteriophage-based system for the selection of structured peptides. Anal Biochem. 2009 May 1;388(1):122-7. DOI:10.1016/j.ab.2009.01.042 | PubMed ID:19454225 | HubMed [Paper21]
  3. Gao S, Simon MJ, Morrison B 3rd, and Banta S. Bifunctional chimeric fusion proteins engineered for DNA delivery: optimization of the protein to DNA ratio. Biochim Biophys Acta. 2009 Mar;1790(3):198-207. DOI:10.1016/j.bbagen.2009.01.001 | PubMed ID:19402206 | HubMed [Paper20]
  4. Glykys DJ and Banta S. Metabolic control analysis of an enzymatic biofuel cell. Biotechnol Bioeng. 2009 Apr 15;102(6):1624-35. DOI:10.1002/bit.22199 | PubMed ID:19061242 | HubMed [Paper19]
  5. Chen XJ, West AC, Cropek DM, and Banta S. Detection of the superoxide radical anion using various alkanethiol monolayers and immobilized cytochrome c. Anal Chem. 2008 Dec 15;80(24):9622-9. DOI:10.1021/ac800796b | PubMed ID:19072268 | HubMed [Paper18]
  6. Wheeldon IR, Gallaway JW, Barton SC, and Banta S. Bioelectrocatalytic hydrogels from electron-conducting metallopolypeptides coassembled with bifunctional enzymatic building blocks. Proc Natl Acad Sci U S A. 2008 Oct 7;105(40):15275-80. DOI:10.1073/pnas.0805249105 | PubMed ID:18824691 | HubMed [Paper17]
  7. Casali M, Banta S, Zambonelli C, Megeed Z, and Yarmush ML. Site-directed mutagenesis of the hinge peptide from the hemagglutinin protein: enhancement of the pH-responsive conformational change. Protein Eng Des Sel. 2008 Jun;21(6):395-404. DOI:10.1093/protein/gzn018 | PubMed ID:18411225 | HubMed [Paper16]
  8. Blenner MA and Banta S. Characterization of the 4D5Flu single-chain antibody with a stimulus-responsive elastin-like peptide linker: a potential reporter of peptide linker conformation. Protein Sci. 2008 Mar;17(3):527-36. DOI:10.1110/ps.073257308 | PubMed ID:18218715 | HubMed [Paper15]
  9. Gallaway J, Wheeldon I, Rincon R, Atanassov P, Banta S, and Barton SC. Oxygen-reducing enzyme cathodes produced from SLAC, a small laccase from Streptomyces coelicolor. Biosens Bioelectron. 2008 Mar 14;23(8):1229-35. DOI:10.1016/j.bios.2007.11.004 | PubMed ID:18096378 | HubMed [Paper14]
  10. Wheeldon IR, Barton SC, and Banta S. Bioactive proteinaceous hydrogels from designed bifunctional building blocks. Biomacromolecules. 2007 Oct;8(10):2990-4. DOI:10.1021/bm700858p | PubMed ID:17887795 | HubMed [Paper13]
  11. Chockalingam K, Blenner M, and Banta S. Design and application of stimulus-responsive peptide systems. Protein Eng Des Sel. 2007 Apr;20(4):155-61. DOI:10.1093/protein/gzm008 | PubMed ID:17376876 | HubMed [Paper12]
  12. Banta S, Megeed Z, Casali M, Rege K, and Yarmush ML. Engineering protein and peptide building blocks for nanotechnology. J Nanosci Nanotechnol. 2007 Feb;7(2):387-401. PubMed ID:17450770 | HubMed [Paper11]
  13. Banta S, Vemula M, Yokoyama T, Jayaraman A, Berthiaume F, and Yarmush ML. Contribution of gene expression to metabolic fluxes in hypermetabolic livers induced through burn injury and cecal ligation and puncture in rats. Biotechnol Bioeng. 2007 May 1;97(1):118-37. DOI:10.1002/bit.21200 | PubMed ID:17009336 | HubMed [Paper10]
  14. Banta S, Yokoyama T, Berthiaume F, and Yarmush ML. Effects of dehydroepiandrosterone administration on rat hepatic metabolism following thermal injury. J Surg Res. 2005 Aug;127(2):93-105. DOI:10.1016/j.jss.2005.01.001 | PubMed ID:15882877 | HubMed [Paper9]
  15. Yokoyama T, Banta S, Berthiaume F, Nagrath D, Tompkins RG, and Yarmush ML. Evolution of intrahepatic carbon, nitrogen, and energy metabolism in a D-galactosamine-induced rat liver failure model. Metab Eng. 2005 Mar;7(2):88-103. DOI:10.1016/j.ymben.2004.09.003 | PubMed ID:15781418 | HubMed [Paper8]
  16. Banta S, Yokoyama T, Berthiaume F, and Yarmush ML. Quantitative effects of thermal injury and insulin on the metabolism of the skeletal muscle using the perfused rat hindquarter preparation. Biotechnol Bioeng. 2004 Dec 5;88(5):613-29. DOI:10.1002/bit.20258 | PubMed ID:15470703 | HubMed [Paper7]
  17. Sanli G, Banta S, Anderson S, and Blaber M. Structural alteration of cofactor specificity in Corynebacterium 2,5-diketo-D-gluconic acid reductase. Protein Sci. 2004 Feb;13(2):504-12. DOI:10.1110/ps.03450704 | PubMed ID:14718658 | HubMed [Paper6]
  18. Yarmush ML and Banta S. Metabolic engineering: advances in modeling and intervention in health and disease. Annu Rev Biomed Eng. 2003;5:349-81. DOI:10.1146/annurev.bioeng.5.031003.163247 | PubMed ID:14527316 | HubMed [Paper5]
  19. Banta S, Boston M, Jarnagin A, and Anderson S. Mathematical modeling of in vitro enzymatic production of 2-Keto-L-gulonic acid using NAD(H) or NADP(H) as cofactors. Metab Eng. 2002 Oct;4(4):273-84. PubMed ID:12646322 | HubMed [Paper4]
  20. Banta S and Anderson S. Verification of a novel NADH-binding motif: combinatorial mutagenesis of three amino acids in the cofactor-binding pocket of Corynebacterium 2,5-diketo-D-gluconic acid reductase. J Mol Evol. 2002 Dec;55(6):623-31. DOI:10.1007/s00239-002-2345-x | PubMed ID:12486521 | HubMed [Paper3]
  21. Banta S, Swanson BA, Wu S, Jarnagin A, and Anderson S. Optimizing an artificial metabolic pathway: engineering the cofactor specificity of Corynebacterium 2,5-diketo-D-gluconic acid reductase for use in vitamin C biosynthesis. Biochemistry. 2002 May 21;41(20):6226-36. PubMed ID:12009883 | HubMed [Paper2]
  22. Banta S, Swanson BA, Wu S, Jarnagin A, and Anderson S. Alteration of the specificity of the cofactor-binding pocket of Corynebacterium 2,5-diketo-D-gluconic acid reductase A. Protein Eng. 2002 Feb;15(2):131-40. PubMed ID:11917149 | HubMed [Paper1]
All Medline abstracts: PubMed | HubMed