Difference between revisions of "Banta:Publications"

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{{Template:Banta_Lab_Side}}
 
{{Template:Banta_Lab_Side}}
  
'''Publications (42 Total)'''
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'''Publications (49 Total)'''
  
'''Columbia University''' (31 Total)
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'''Columbia University''' (38 Total)
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 +
Campbell, E., Chuang, S., and Banta, S. (2013) “Modular exchange of substrate-binding loops alters both substrate and cofactor specificity in a member of the aldo-keto reductase superfamily” Protein Engineering, Design and Selection (In Press).
 +
<biblio>
 +
Campbell-PEDS-2013 pmid=23175796
 +
</biblio>
 +
 
 +
Shur, O., and Banta, S. (2013) “Rearranging and concatenating a native RTX domain to understand sequence modularity” Protein Engineering, Design and Selection (In Press).
 +
<biblio>
 +
Shur-PEDS-2013 pmid=23173179
 +
</biblio>
 +
 
 +
Sahin, A., Lin, W.-T., Khunjar, W.O., Chandran, K., Banta, S., and West, A.C., (2013) “Electrochemical reduction of nitrite to ammonia for use in a bioreactor” Journal of the Electrochemical Society 160(1) G19-G26.
 +
<biblio>
 +
Sahin-JES-2013
 +
</biblio>[[doi:10.1149/2.042301jes]]
 +
 
 +
Khunjar, W.O., Sahin, A., West, A.C., Chandran, K., and Banta, S. (2012) “Biomass production from electricity using ammonia as an electron carrier in a reverse microbial fuel cell” PLoS ONE 7(9) e44846.
 +
<biblio>
 +
Khunjar-PLoSONE-2012 pmid=23028643
 +
</biblio>
 +
 
 +
Felsovalyi, F., Patel, T., Mangiagalli, P., Kumar, S.K., and Banta, S. (2012) “Effect of thermal stability on protein adsorption to silica using homologous aldo-keto reductases” Protein Science 21(8) 1113-1125
 +
<biblio>
 +
Felsovalyi-ProtSci-2012 pmid=22619179
 +
</biblio>
 +
 
 +
Dooley, K., Kim, Y.H., Lu, H.D., Tu, R., and Banta, S. (2012) “Engineering of an Environmentally Responsive Beta Roll Peptide for Use as a Calcium-Dependent Cross-Linking Domain for Peptide Hydrogel Formation” Biomacromolecules 13(6) 1758-1764.
 +
<biblio>
 +
Dooley-Biomacromol-2012 pmid=22545587
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</biblio>
 +
 
 +
Campbell, E., Meredith, M., Minteer, S.D., and Banta, S., (2012) “An Enzymatic biofuel cell utilizing a biomimetic cofactor” Chemical Communications 48(13) 1898-1900.
 +
<biblio>
 +
Campbell-ChemComm-2012 pmid=22227738
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</biblio>
  
 
Holland, J.T., Lau, C., Brozik, S., Atanassov, P., and Banta, S., (2011) “Protein engineering of a glucose oxidase for direct electron transfer via targeted gold nanoparticle conjugation” Journal of the American Chemical Society 133(48) 19262-19265.
 
Holland, J.T., Lau, C., Brozik, S., Atanassov, P., and Banta, S., (2011) “Protein engineering of a glucose oxidase for direct electron transfer via targeted gold nanoparticle conjugation” Journal of the American Chemical Society 133(48) 19262-19265.
 +
<biblio>
 +
Holland-JACS-2011 pmid=22050076
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</biblio>
  
Wu, J., Park, J.P., Dooley, K., Cropek, D.M., West, A.C. and Banta, S. (2011) “Rapid development of new protein biosensors utilizing peptides obtained via phage display” PLoS One 6(10) 1-9.  
+
Wu, J., Park, J.P., Dooley, K., Cropek, D.M., West, A.C. and Banta, S. (2011) “Rapid development of new protein biosensors utilizing peptides obtained via phage display” PLoS ONE 6(10) e24948.
 +
<biblio>
 +
Wu-PLoSOne-2011 pmid=22003385
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</biblio>
 +
 
 +
Sahin, A., Dooley, K., Cropek, D.M., West, A.C., and Banta, S. (2011) “A dual enzyme electrochemical assay for the detection of organophosphorus compounds using organophosphorus hydrolase and horseradish peroxidase” Sensors and Actuators B: Chemical 158(1) 353-360.
 +
<biblio>
 +
Sahin-SensActuatB-2011
 +
</biblio>[[doi:10.1016/j.snb.2011.06.034]]
  
 
Felsovalyi, F., Mangiagalli, P., Bureau, C., Kumar, S.K., and Banta, S. (2011) “Reversibility of the Adsorption of Lysozyme on Silica” Langmuir 27(19) 11873-11882.
 
Felsovalyi, F., Mangiagalli, P., Bureau, C., Kumar, S.K., and Banta, S. (2011) “Reversibility of the Adsorption of Lysozyme on Silica” Langmuir 27(19) 11873-11882.
 +
<biblio>
 +
Felsovalyi-Langmuir-2011 pmid=21859112
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</biblio>
  
Glykys, D.J., Szilvay, G.R., Tortosa, P., Suarez Diez, M., Jaramillo, A., and Banta, S. (2011) “Pushing the limits of automatic computational protein design: computational design, expression, and characterization of a large synthetic protein based on a fungal laccase scaffold” Systems and Synthetic Biology 5(1-2) 45-58.
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Szilvay, G.R., Brocato, S., Ivnitski, D., Li, C., De La Iglesia, P., Lau, C., Chi, E., Werner-Washburne, M., Banta, S., and Atanassov, P. (2011) “Engineering of a redox protein for DNA-directed assembly” Chemical Communications 47(26) 7464-7466.
 
+
<biblio>
Sahin, A., Dooley, K., Cropek, D.M., West, A.C., and Banta, S. (2011) “A dual enzyme electrochemical assay for the detection of organophosphorus compounds using organophosphorus hydrolase and horseradish peroxidase” Sensors and Actuators B: Chemical 158(1) 353-360.
+
Szilvay-ChemComm-2011 pmid=21541425
 +
</biblio>
  
 
Kang, W.H., Simon, M.J., Gao, S., Banta, S., and Morrison III, B. (2011) “Attenuation of astrocyte activation by TAT mediated-delivery of a peptide JNK inhibitor” Journal of Neurotrauma 28(7) 1219-1228.
 
Kang, W.H., Simon, M.J., Gao, S., Banta, S., and Morrison III, B. (2011) “Attenuation of astrocyte activation by TAT mediated-delivery of a peptide JNK inhibitor” Journal of Neurotrauma 28(7) 1219-1228.
 +
<biblio>
 +
Kang-JNeurotrauma-2011 pmid=21510821
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</biblio>
  
Szilvay, G.R., Brocato, S., Ivnitski, D., Li, C., De La Iglesia, P., Lau, C., Chi, E., Werner-Washburne, M., Banta, S., and Atanassov, P. (2011) “Engineering of a redox protein for DNA-directed assembly” Chemical Communications 47(26) 7464-7466.
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Shur, O., Wu, J., Cropek, D.M., and Banta, S. (2011) “Monitoring the conformational changes of an intrinsically disordered peptide using a Quartz Crystal Microbalance” ''Protein Science'' 20(5) 925-930.  
 +
<biblio>
 +
Shur-ProtSci-2011 pmid=21416544
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</biblio>
  
 
Gao, S., Simon, M.J., Hue, C.D., Morrison III, B., and Banta, S. (2011) “An unusual cell penetrating peptide identified using a plasmid display-based functional selection platform” ACS Chemical Biology 6(5) 484-491 (Recommended by Faculty of 1000, Featured in Biotechniques News).
 
Gao, S., Simon, M.J., Hue, C.D., Morrison III, B., and Banta, S. (2011) “An unusual cell penetrating peptide identified using a plasmid display-based functional selection platform” ACS Chemical Biology 6(5) 484-491 (Recommended by Faculty of 1000, Featured in Biotechniques News).
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<biblio>
 +
Gao-ACSChemBiol-2011 pmid=21291271
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</biblio>
  
Shur, O., Wu, J., Cropek, D.M., and Banta, S. (2011) “Monitoring the conformational changes of an intrinsically disordered peptide using a Quartz Crystal Microbalance” ''Protein Science'' 20(5) 925-930.  
+
Simon, M.J., Kang, W.H., Gao, S., Banta, S., and Morrison III, B. (2011) “TAT is not capable of transcellular delivery across an intact endothelial monolayer in vitro” ''Annals of Biomedical Engineering'' 39(1) 394-401.  
 +
<biblio>
 +
Simon-AnnalBiomedEng-2011 pmid=20737289
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</biblio>
  
Simon, M.J., Gao, S., Kang, W.H., Banta, S., and Morrison III, B. (2011) “TAT is not capable of transcellular delivery across an intact endothelial monolayer in vitro” ''Annals of Biomedical Engineering'' 39(1) 394-401.  
+
Glykys, D.J., Szilvay, G.R., Tortosa, P., Suarez Diez, M., Jaramillo, A., and Banta, S. (2011) “Pushing the limits of automatic computational protein design: computational design, expression, and characterization of a large synthetic protein based on a fungal laccase scaffold” Systems and Synthetic Biology 5(1-2) 45-58.
 +
<biblio>
 +
Glykys-SystSynthBiol-2011 pmid=22654993
 +
</biblio>
  
 
Gao, S., Simon, M.J., Morrison III, B., and Banta, S. (2010) “A plasmid display platform for the selection of peptides exhibiting a functional cell-penetrating phenotype” ''Biotechnology Progress'' 26(6) 1796-1800.
 
Gao, S., Simon, M.J., Morrison III, B., and Banta, S. (2010) “A plasmid display platform for the selection of peptides exhibiting a functional cell-penetrating phenotype” ''Biotechnology Progress'' 26(6) 1796-1800.
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<biblio>
 +
Gao-BiotechnolProg-2010 pmid=20938973
 +
</biblio>
  
 
Simon, M.J., Kang, W.H., Gao, S., Banta, S., and Morrison III, B. (2010) “Increased delivery of TAT across an endothelial monolayer following ischemic injury” ''Neuroscience Letters'' 486(1) 1-4.
 
Simon, M.J., Kang, W.H., Gao, S., Banta, S., and Morrison III, B. (2010) “Increased delivery of TAT across an endothelial monolayer following ischemic injury” ''Neuroscience Letters'' 486(1) 1-4.
 
+
<biblio>
Campbell, E., Wheeldon, I.R., and Banta, S. (2010) “Broadening the cofactor specificity of a thermostable alcohol dehydrogenase using rational protein design introduces novel kinetic transient behavior” ''Biotechnology and Bioengineering'' 107(5) 763-774.
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Simon-NeuroscieLett-2010 pmid=20851169
 +
</biblio>
  
 
Wu, J., Cropek, D.M., West, A.C. and Banta, S.  (2010) “Development of a troponin I biosensor using a peptide obtained through phage display” ''Analytical Chemistry'' 82(19) 8235-8243.
 
Wu, J., Cropek, D.M., West, A.C. and Banta, S.  (2010) “Development of a troponin I biosensor using a peptide obtained through phage display” ''Analytical Chemistry'' 82(19) 8235-8243.
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<biblio>
 +
Wu-AnalChem-2010 pmid=20831206
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</biblio>
  
Banta, S., Wheeldon, I.R., and Blenner, M. (2010) “Protein engineering in the development of functional hydrogels” ''Annual Review of Biomedical Engineering'' 12 176-186.
+
Campbell, E., Wheeldon, I.R., and Banta, S. (2010) “Broadening the cofactor specificity of a thermostable alcohol dehydrogenase using rational protein design introduces novel kinetic transient behavior” ''Biotechnology and Bioengineering'' 107(5) 763-774.  
 +
<biblio>
 +
Campbell-BiotechnolBioeng-2010 pmid=20632378 
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</biblio>
  
 
Lu, H.D., Wheeldon, I.R., and Banta, S. (2010) “Catalytic biomaterials: Engineering organophosphate hydrolase to form self-assembling enzymatic hydrogels” ''Protein Engineering, Design and Selection'' 23(7) 559-566.
 
Lu, H.D., Wheeldon, I.R., and Banta, S. (2010) “Catalytic biomaterials: Engineering organophosphate hydrolase to form self-assembling enzymatic hydrogels” ''Protein Engineering, Design and Selection'' 23(7) 559-566.
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<biblio>
 +
Lu-PEDS-2010 pmid=20457694 
 +
</biblio>
  
 
Blenner, M.A., Shur, O., Szilvay, G.R., Cropek, D.M., and Banta, S. (2010) “Calcium-induced folding of a beta roll motif requires C-terminal entropic stabilization” ''Journal of Molecular Biology'' 400(2) 244-256.
 
Blenner, M.A., Shur, O., Szilvay, G.R., Cropek, D.M., and Banta, S. (2010) “Calcium-induced folding of a beta roll motif requires C-terminal entropic stabilization” ''Journal of Molecular Biology'' 400(2) 244-256.
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<biblio>
 +
Blenner-JMolBiol-2010 pmid=20438736 
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</biblio>
 +
 +
Banta, S., Wheeldon, I.R., and Blenner, M. (2010) “Protein engineering in the development of functional hydrogels” ''Annual Review of Biomedical Engineering'' 12 176-186.
 +
<biblio>
 +
Banta-AnnRevBME-2010 pmid=20420519 
 +
</biblio>
  
 
Park, J.P., Cropek, D.M., and Banta, S. (2010) “High affinity peptides for the recognition of the heart disease biomarker troponin I using phage display” ''Biotechnology and Bioengineering'' 105(4) 678-686.
 
Park, J.P., Cropek, D.M., and Banta, S. (2010) “High affinity peptides for the recognition of the heart disease biomarker troponin I using phage display” ''Biotechnology and Bioengineering'' 105(4) 678-686.
 +
<biblio>
 +
Park-BiotechnolBioeng-2009 pmid=19891006 
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</biblio>
  
 
Szilvay, G.R., Blenner, M.A., Shur, O., Cropek, D.M., and Banta, S. (2009) “A FRET-based method for probing the calcium-dependent conformational behavior of an intrinsically disordered beta roll domain from the Bordetella pertussis adenylate cyclase” ''Biochemistry'' 48(47) 11273-11282.
 
Szilvay, G.R., Blenner, M.A., Shur, O., Cropek, D.M., and Banta, S. (2009) “A FRET-based method for probing the calcium-dependent conformational behavior of an intrinsically disordered beta roll domain from the Bordetella pertussis adenylate cyclase” ''Biochemistry'' 48(47) 11273-11282.
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<biblio>
 +
Szilvay-Biochem-2009 pmid=19860484 
 +
</biblio>
  
 
Wheeldon, I.R., Campbell, E. and Banta, S. (2009) “A chimeric fusion protein engineered with disparate functionalities— enzymatic activity and self assembly” ''Journal of Molecular Biology'' 392(1) 129-142.
 
Wheeldon, I.R., Campbell, E. and Banta, S. (2009) “A chimeric fusion protein engineered with disparate functionalities— enzymatic activity and self assembly” ''Journal of Molecular Biology'' 392(1) 129-142.
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<biblio>
 +
Wheeldon-JMolBiol-2009 pmid=19577577 
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</biblio>
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 +
Chockalingam, K., Lu, H.D., and Banta, S. (2009) “Development of a bacteriophage-based system for the selection of short structured peptides” ''Analytical Biochemistry'' 388(1) 122-127.
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<biblio>
 +
Chockalingam-AnalBiochem-2009 pmid=19454225 
 +
</biblio>
  
 
Simon, M.J., Gao, S., Kang, W.H., Banta, S., and Morrison III, B. (2009) “TAT-mediated intracellular protein delivery to primary brain cells is dependent on glycosaminoglycan expression” ''Biotechnology and Bioengineering'' 104(1) 10-19.
 
Simon, M.J., Gao, S., Kang, W.H., Banta, S., and Morrison III, B. (2009) “TAT-mediated intracellular protein delivery to primary brain cells is dependent on glycosaminoglycan expression” ''Biotechnology and Bioengineering'' 104(1) 10-19.
 
+
<biblio>
Chockalingam, K., Lu, H.D., and Banta, S. (2009) “Development of a bacteriophage-based system for the selection of short structured peptides” ''Analytical Biochemistry'' 388(1) 122-127.
+
Simon-BiotechnolBioeng-2009 pmid=19449355 
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</biblio>
  
 
Gao, S., Simon, M.J., Morrison III, B., and Banta, S. (2009) “Bifunctional chimeric fusion proteins engineered for DNA delivery: Optimization of the protein to DNA ratio” ''Biochimica et Biophysica Acta (General Subjects)'' 1790(3) 198-207.  
 
Gao, S., Simon, M.J., Morrison III, B., and Banta, S. (2009) “Bifunctional chimeric fusion proteins engineered for DNA delivery: Optimization of the protein to DNA ratio” ''Biochimica et Biophysica Acta (General Subjects)'' 1790(3) 198-207.  
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<biblio>
 +
Gao-BBA-2009 pmid=19402206 
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</biblio>
  
 
Glykys, D.J., and Banta, S. (2009) “Metabolic control analysis of an enzymatic biofuel cell” ''Biotechnology and Bioengineering'' 102(6) 1624-1635.
 
Glykys, D.J., and Banta, S. (2009) “Metabolic control analysis of an enzymatic biofuel cell” ''Biotechnology and Bioengineering'' 102(6) 1624-1635.
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<biblio>
 +
Glykys-BiotechnolBioeng-2009 pmid=19061242 
 +
</biblio>
  
 
Chen, X.J., West, A.C., Cropek, D.M., and Banta, S. (2008) “Detection of the superoxide radical anion using various alkanethiol monolayers and immobilized cytochrome c” ''Analytical Chemistry'' 80(24) 9622-9629.
 
Chen, X.J., West, A.C., Cropek, D.M., and Banta, S. (2008) “Detection of the superoxide radical anion using various alkanethiol monolayers and immobilized cytochrome c” ''Analytical Chemistry'' 80(24) 9622-9629.
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<biblio>
 +
Chen-AnalChem-2008 pmid=19072268 
 +
</biblio>
  
 
Wheeldon, I.R., Gallaway, J.W., Calabrese Barton, S., and Banta, S. (2008) “Bioelectrocatalytic hydrogels from electron-conducting metallopolypeptides coassembled with bifunctional enzymatic building blocks” ''Proceedings of the National Academy of Sciences of the United States of America'' 105(40) 15275-15280.  
 
Wheeldon, I.R., Gallaway, J.W., Calabrese Barton, S., and Banta, S. (2008) “Bioelectrocatalytic hydrogels from electron-conducting metallopolypeptides coassembled with bifunctional enzymatic building blocks” ''Proceedings of the National Academy of Sciences of the United States of America'' 105(40) 15275-15280.  
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<biblio>
 +
Wheeldon-PNAS-2008 pmid=18824691 
 +
</biblio>
  
 
Blenner M.A., and Banta, S. (2008) “Characterization of the 4D5Flu single chain antibody with a stimulus-responsive elastin-like peptide linker: A potential reporter of peptide linker conformation” ''Protein Science'' 17(3) 527-536.  
 
Blenner M.A., and Banta, S. (2008) “Characterization of the 4D5Flu single chain antibody with a stimulus-responsive elastin-like peptide linker: A potential reporter of peptide linker conformation” ''Protein Science'' 17(3) 527-536.  
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<biblio>
 +
Blenner-ProtSci-2008 pmid=18218715 
 +
</biblio>
  
 
Gallaway, J., Wheeldon, I.R., Rincon, R., Atanassov, P., Banta, S., and Calabrese Barton, S. (2008) “Oxygen-Reducing Enzyme Cathodes Produced from SLAC, a Small Laccase from Streptomyces coelicolor, For Use at Neutral pH” ''Biosensors and Bioelectronics'' 23(8) 1229-1235.
 
Gallaway, J., Wheeldon, I.R., Rincon, R., Atanassov, P., Banta, S., and Calabrese Barton, S. (2008) “Oxygen-Reducing Enzyme Cathodes Produced from SLAC, a Small Laccase from Streptomyces coelicolor, For Use at Neutral pH” ''Biosensors and Bioelectronics'' 23(8) 1229-1235.
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<biblio>
 +
Gallaway-BiosensBioelectron-2008 pmid=18096378
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</biblio>
  
 
Wheeldon, I.R., Calabrese Barton, S., and Banta, S. (2007) “Bioactive Proteinaceous Hydrogels from Designed Bi-functional Building Blocks” ''Biomacromolecules'' 8(10) 2990-2994.
 
Wheeldon, I.R., Calabrese Barton, S., and Banta, S. (2007) “Bioactive Proteinaceous Hydrogels from Designed Bi-functional Building Blocks” ''Biomacromolecules'' 8(10) 2990-2994.
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Chockalingam, K., Blenner, M., and Banta, S. (2007) “Design and Application of Stimulus-Responsive Peptide Systems” ''Protein Engineering, Design and Selection'' 20(4) 155-161.
 
Chockalingam, K., Blenner, M., and Banta, S. (2007) “Design and Application of Stimulus-Responsive Peptide Systems” ''Protein Engineering, Design and Selection'' 20(4) 155-161.
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<biblio>
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Chockalingam-PEDS-2007 pmid=17376876 
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</biblio>
  
 
Banta, S.*, Megeed, Z.*, Casali, M., Rege, K., and Yarmush, M.L. (2007) “Engineering Protein and Peptide Building Blocks for Nanotechnology” ''Journal of Nanoscience and Nanotechnology'' 7(2) 387-401 (*co-first authors).
 
Banta, S.*, Megeed, Z.*, Casali, M., Rege, K., and Yarmush, M.L. (2007) “Engineering Protein and Peptide Building Blocks for Nanotechnology” ''Journal of Nanoscience and Nanotechnology'' 7(2) 387-401 (*co-first authors).
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<biblio>
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Casali-JNanosciNanotechnol-2007 pmid=17450770 
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</biblio>
  
 
   
 
   
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Casali, M., Banta, S., Zambonelli, C., Megeed, Z., and Yarmush, M.L. (2008) ”Site-directed mutagenesis of the hinge peptide from the Hemagglutinin protein: Enhancement of the pH-responsive conformational change” ''Protein Engineering, Design and Selection'' 21(6) 395-404.
 
Casali, M., Banta, S., Zambonelli, C., Megeed, Z., and Yarmush, M.L. (2008) ”Site-directed mutagenesis of the hinge peptide from the Hemagglutinin protein: Enhancement of the pH-responsive conformational change” ''Protein Engineering, Design and Selection'' 21(6) 395-404.
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<biblio>
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Casali-PEDS-2008 pmid=18411225 
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</biblio>
  
 
Banta, S.*, Vemula, M.*, Yokoyama, T., Jayaraman, A., Berthiaume, F., and Yarmush, M.L. (2007) “Contribution of Gene Expression to Metabolic Fluxes in Hypermetabolic Livers Induced Through Burn Injury and Cecal Ligation and Puncture in Rats” ''Biotechnology and Bioengineering'' 97(1) 118-137 (*co-first authors) (Featured in Editor’s Spotlight ).
 
Banta, S.*, Vemula, M.*, Yokoyama, T., Jayaraman, A., Berthiaume, F., and Yarmush, M.L. (2007) “Contribution of Gene Expression to Metabolic Fluxes in Hypermetabolic Livers Induced Through Burn Injury and Cecal Ligation and Puncture in Rats” ''Biotechnology and Bioengineering'' 97(1) 118-137 (*co-first authors) (Featured in Editor’s Spotlight ).
 +
<biblio>
 +
Banta-BiotechnolBioeng-2007 pmid=17009336 
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</biblio>
  
 
Banta, S., Yokoyama, T., Berthiaume, F., and Yarmush, M.L. (2005) “Effects of Dehydroepiandrosterone administration on rat hepatic metabolism following thermal injury” ''Journal of Surgical Research'' 127(2) 93-105.
 
Banta, S., Yokoyama, T., Berthiaume, F., and Yarmush, M.L. (2005) “Effects of Dehydroepiandrosterone administration on rat hepatic metabolism following thermal injury” ''Journal of Surgical Research'' 127(2) 93-105.
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<biblio>
 +
Banta-JSurgRes-2005 pmid=15882877
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</biblio>
  
Yokoyama, T., Banta, S., Nagrath, D., Berthiaume, F., Tompkins, R.G., and Yarmush, M.L. (2005) “Evolution of intrahepatic carbon, nitrogen, and energy metabolism in a D-galactosamine-induced rat liver failure model” ''Metabolic Engineering'' 7(2) 88-103.
+
Yokoyama, T., Banta, S., Berthiaume, F., Nagrath, D., Tompkins, R.G., and Yarmush, M.L. (2005) “Evolution of intrahepatic carbon, nitrogen, and energy metabolism in a D-galactosamine-induced rat liver failure model” ''Metabolic Engineering'' 7(2) 88-103.
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<biblio>
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Yokoyama-MetabolEng-2005 pmid=15781418
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</biblio>
  
Banta, S., Yokoyama, T., Berthiaume, F., and Yarmush, M.L. (2004) “Metabolic Flux Analysis of the perfused rat hindquarter: Effects of thermal injury with and without insulin” ''Biotechnology and Bioengineering'' 88(5) 613-629.
+
Banta, S., Yokoyama, T., Berthiaume, F., and Yarmush, M.L. (2004) “Quantitative effects of thermal injury and insulin on the metabolism of the skeletal muscle using the perfused rat hindquarter preparation” Biotechnology and Bioengineering 88(5) 613-629.
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<biblio>
 +
Banta-BiotechnolBioeng-2004 pmid=15470703
 +
</biblio>
  
 
Yarmush, M.L. and Banta, S. (2003) “Metabolic Engineering: Advances in Modeling and Intervention in Health and Disease” ''Annual Review of Biomedical Engineering'' 5 349-381.
 
Yarmush, M.L. and Banta, S. (2003) “Metabolic Engineering: Advances in Modeling and Intervention in Health and Disease” ''Annual Review of Biomedical Engineering'' 5 349-381.
 +
<biblio>
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Yarmush-AnnRevBME-2003 pmid=14527316
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</biblio>
  
  
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Sanli, G., Banta, S., Anderson, S., and Blaber, M. (2004) “Structural alteration of cofactor specificity in Corynebacterium 2,5-diketo-D-gluconic acid reductase” ''Protein Science'' 13(2) 504-512.
 
Sanli, G., Banta, S., Anderson, S., and Blaber, M. (2004) “Structural alteration of cofactor specificity in Corynebacterium 2,5-diketo-D-gluconic acid reductase” ''Protein Science'' 13(2) 504-512.
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<biblio>
 +
Sanli-ProtSci-2004 pmid=14718658 
 +
</biblio>
  
 
Banta, S., Boston, M., Jarnagin, A., and Anderson, S. (2002) “Mathematical modeling of in vitro enzymatic production of 2-keto-L-gulonic acid using NAD(H) or NADP(H) as cofactors” ''Metabolic Engineering'' 4(4) 273-284.
 
Banta, S., Boston, M., Jarnagin, A., and Anderson, S. (2002) “Mathematical modeling of in vitro enzymatic production of 2-keto-L-gulonic acid using NAD(H) or NADP(H) as cofactors” ''Metabolic Engineering'' 4(4) 273-284.
 +
<biblio>
 +
Banta-MetabolEng-2002 pmid=12646322
 +
</biblio>
  
 
Banta, S., and Anderson, S. (2002) “Verification of a novel NADH-binding motif: Combinatorial mutagenesis of three amino acids in the cofactor binding pocket of Corynebacterium 2,5-diketo-D-gluconic acid reductase” ''Journal of Molecular Evolution'' 55(6) 623-631.
 
Banta, S., and Anderson, S. (2002) “Verification of a novel NADH-binding motif: Combinatorial mutagenesis of three amino acids in the cofactor binding pocket of Corynebacterium 2,5-diketo-D-gluconic acid reductase” ''Journal of Molecular Evolution'' 55(6) 623-631.
 +
<biblio>
 +
Banta-JMolEvol-2002 pmid=12486521
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</biblio>
  
 
Banta, S., Swanson, B.A., Wu, S., Jarnagin, A., and Anderson, S. (2002) “Optimizing an artificial metabolic pathway: Engineering the cofactor specificity of Corynebacterium 2,5-diketo-D-gluconic acid reductase for use in vitamin C biosynthesis” ''Biochemistry'' 41(20) 6226-6236.
 
Banta, S., Swanson, B.A., Wu, S., Jarnagin, A., and Anderson, S. (2002) “Optimizing an artificial metabolic pathway: Engineering the cofactor specificity of Corynebacterium 2,5-diketo-D-gluconic acid reductase for use in vitamin C biosynthesis” ''Biochemistry'' 41(20) 6226-6236.
 +
<biblio>
 +
Banta-Biochem-2002 pmid=12009883
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</biblio>
  
 
Banta, S., Swanson, B.A., Wu, S., Jarnagin, A., and Anderson, S. (2002) “Alteration of the specificity of the cofactor-binding pocket of Corynebacterium 2,5-diketo-D-gluconic acid reductase A” ''Protein Engineering'' 15(2) 131-140. (Featured on cover)
 
Banta, S., Swanson, B.A., Wu, S., Jarnagin, A., and Anderson, S. (2002) “Alteration of the specificity of the cofactor-binding pocket of Corynebacterium 2,5-diketo-D-gluconic acid reductase A” ''Protein Engineering'' 15(2) 131-140. (Featured on cover)
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<biblio>
 +
Banta-PEDS-2002 pmid=11917149
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</biblio>
  
  

Revision as of 07:37, 25 November 2012

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Banta Lab

Protein and Metabolic Engineering

Home Lab Members Publications Research Interests Courses Pictures Positions Available


Recent Lab News

10/2017 There have been some unexpected changes to the OpenWetWare platform, affecting the formatting of the Banta Lab Website. We are currently working on addressing these issues.

9/2017 A paper entitled “Block V RTX domain of adenylate cyclase from Bordetella pertussis: A conformationally dynamic scaffold for protein engineering applications” by Bulutoglu and Banta was published in Toxins as an Invited Review for the Special Issue: Adenylate Cyclase (CyaA) Toxin

9/2017 A paper entitled “Catch and release: Engineered allosterically-regulated β-roll peptides enable on/off biomolecular recognition” by Bulutoglu, Dooley, Szilvay, Blenner and Banta was published in ACS Synthetic Biology.

9/2017 A paper entitled “Block V RTX domain of adenylate cyclase from Bordetella pertussis: A conformationally dynamic scaffold for protein engineering applications” by Bulutoglu and Banta was published in Toxins as an Invited Review for the Special Issue: Adenylate Cyclase (CyaA) Toxin.

9/2017 Congratulations to Yuta Inaba for passing his qualifying exam!

8/2017 Harun Ozbakir successfully defended his PhD thesis, the fifteenth from the Banta group. His thesis was entitled "Engineering Electron Transfer Processes in Oxidoreductases: Applications in Biocatalysis". Congratulations Dr. Ozbakir!

8/2017 Professor Banta and Professor Jin Montclare of NYU co-organized a 2 day Symposium consisting of 4 sessions entitled "Recombinant Type Materials" at the 254th National Meeting of the American Chemical Society in Washington, DC. Professor Banta gave a presentation at the Symposium entitled “Engineering the Calcium-Regulated β-Roll Peptide for Biomaterials Applications”.


See our full news page for older news


Publications (49 Total)

Columbia University (38 Total)

Campbell, E., Chuang, S., and Banta, S. (2013) “Modular exchange of substrate-binding loops alters both substrate and cofactor specificity in a member of the aldo-keto reductase superfamily” Protein Engineering, Design and Selection (In Press).

  1. Campbell E, Chuang S, and Banta S. Modular exchange of substrate-binding loops alters both substrate and cofactor specificity in a member of the aldo-keto reductase superfamily. Protein Eng Des Sel. 2013 Mar;26(3):181-6. DOI:10.1093/protein/gzs095 | PubMed ID:23175796 | HubMed [Campbell-PEDS-2013]

Shur, O., and Banta, S. (2013) “Rearranging and concatenating a native RTX domain to understand sequence modularity” Protein Engineering, Design and Selection (In Press).

  1. Shur O and Banta S. Rearranging and concatenating a native RTX domain to understand sequence modularity. Protein Eng Des Sel. 2013 Mar;26(3):171-80. DOI:10.1093/protein/gzs092 | PubMed ID:23173179 | HubMed [Shur-PEDS-2013]

Sahin, A., Lin, W.-T., Khunjar, W.O., Chandran, K., Banta, S., and West, A.C., (2013) “Electrochemical reduction of nitrite to ammonia for use in a bioreactor” Journal of the Electrochemical Society 160(1) G19-G26.

  1. [Sahin-JES-2013]
doi:10.1149/2.042301jes

Khunjar, W.O., Sahin, A., West, A.C., Chandran, K., and Banta, S. (2012) “Biomass production from electricity using ammonia as an electron carrier in a reverse microbial fuel cell” PLoS ONE 7(9) e44846.

  1. Khunjar WO, Sahin A, West AC, Chandran K, and Banta S. Biomass production from electricity using ammonia as an electron carrier in a reverse microbial fuel cell. PLoS One. 2012;7(9):e44846. DOI:10.1371/journal.pone.0044846 | PubMed ID:23028643 | HubMed [Khunjar-PLoSONE-2012]

Felsovalyi, F., Patel, T., Mangiagalli, P., Kumar, S.K., and Banta, S. (2012) “Effect of thermal stability on protein adsorption to silica using homologous aldo-keto reductases” Protein Science 21(8) 1113-1125

  1. Felsovalyi F, Patel T, Mangiagalli P, Kumar SK, and Banta S. Effect of thermal stability on protein adsorption to silica using homologous aldo-keto reductases. Protein Sci. 2012 Aug;21(8):1113-25. DOI:10.1002/pro.2099 | PubMed ID:22619179 | HubMed [Felsovalyi-ProtSci-2012]

Dooley, K., Kim, Y.H., Lu, H.D., Tu, R., and Banta, S. (2012) “Engineering of an Environmentally Responsive Beta Roll Peptide for Use as a Calcium-Dependent Cross-Linking Domain for Peptide Hydrogel Formation” Biomacromolecules 13(6) 1758-1764.

  1. Dooley K, Kim YH, Lu HD, Tu R, and Banta S. Engineering of an environmentally responsive beta roll peptide for use as a calcium-dependent cross-linking domain for peptide hydrogel formation. Biomacromolecules. 2012 Jun 11;13(6):1758-64. DOI:10.1021/bm3002446 | PubMed ID:22545587 | HubMed [Dooley-Biomacromol-2012]

Campbell, E., Meredith, M., Minteer, S.D., and Banta, S., (2012) “An Enzymatic biofuel cell utilizing a biomimetic cofactor” Chemical Communications 48(13) 1898-1900.

  1. Campbell E, Meredith M, Minteer SD, and Banta S. Enzymatic biofuel cells utilizing a biomimetic cofactor. Chem Commun (Camb). 2012 Feb 11;48(13):1898-900. DOI:10.1039/c2cc16156g | PubMed ID:22227738 | HubMed [Campbell-ChemComm-2012]

Holland, J.T., Lau, C., Brozik, S., Atanassov, P., and Banta, S., (2011) “Protein engineering of a glucose oxidase for direct electron transfer via targeted gold nanoparticle conjugation” Journal of the American Chemical Society 133(48) 19262-19265.

  1. Holland JT, Lau C, Brozik S, Atanassov P, and Banta S. Engineering of glucose oxidase for direct electron transfer via site-specific gold nanoparticle conjugation. J Am Chem Soc. 2011 Dec 7;133(48):19262-5. DOI:10.1021/ja2071237 | PubMed ID:22050076 | HubMed [Holland-JACS-2011]

Wu, J., Park, J.P., Dooley, K., Cropek, D.M., West, A.C. and Banta, S. (2011) “Rapid development of new protein biosensors utilizing peptides obtained via phage display” PLoS ONE 6(10) e24948.

  1. Wu J, Park JP, Dooley K, Cropek DM, West AC, and Banta S. Rapid development of new protein biosensors utilizing peptides obtained via phage display. PLoS One. 2011;6(10):e24948. DOI:10.1371/journal.pone.0024948 | PubMed ID:22003385 | HubMed [Wu-PLoSOne-2011]

Sahin, A., Dooley, K., Cropek, D.M., West, A.C., and Banta, S. (2011) “A dual enzyme electrochemical assay for the detection of organophosphorus compounds using organophosphorus hydrolase and horseradish peroxidase” Sensors and Actuators B: Chemical 158(1) 353-360.

  1. [Sahin-SensActuatB-2011]
doi:10.1016/j.snb.2011.06.034

Felsovalyi, F., Mangiagalli, P., Bureau, C., Kumar, S.K., and Banta, S. (2011) “Reversibility of the Adsorption of Lysozyme on Silica” Langmuir 27(19) 11873-11882.

  1. Felsovalyi F, Mangiagalli P, Bureau C, Kumar SK, and Banta S. Reversibility of the adsorption of lysozyme on silica. Langmuir. 2011 Oct 4;27(19):11873-82. DOI:10.1021/la202585r | PubMed ID:21859112 | HubMed [Felsovalyi-Langmuir-2011]

Szilvay, G.R., Brocato, S., Ivnitski, D., Li, C., De La Iglesia, P., Lau, C., Chi, E., Werner-Washburne, M., Banta, S., and Atanassov, P. (2011) “Engineering of a redox protein for DNA-directed assembly” Chemical Communications 47(26) 7464-7466.

  1. Szilvay GR, Brocato S, Ivnitski D, Li C, De La Iglesia P, Lau C, Chi E, Werner-Washburne M, Banta S, and Atanassov P. Engineering of a redox protein for DNA-directed assembly. Chem Commun (Camb). 2011 Jul 14;47(26):7464-6. DOI:10.1039/c1cc11951f | PubMed ID:21541425 | HubMed [Szilvay-ChemComm-2011]

Kang, W.H., Simon, M.J., Gao, S., Banta, S., and Morrison III, B. (2011) “Attenuation of astrocyte activation by TAT mediated-delivery of a peptide JNK inhibitor” Journal of Neurotrauma 28(7) 1219-1228.

  1. Kang WH, Simon MJ, Gao S, Banta S, and Morrison B 3rd. Attenuation of astrocyte activation by TAT-mediated delivery of a peptide JNK inhibitor. J Neurotrauma. 2011 Jul;28(7):1219-28. DOI:10.1089/neu.2011.1879 | PubMed ID:21510821 | HubMed [Kang-JNeurotrauma-2011]

Shur, O., Wu, J., Cropek, D.M., and Banta, S. (2011) “Monitoring the conformational changes of an intrinsically disordered peptide using a Quartz Crystal Microbalance” Protein Science 20(5) 925-930.

  1. Shur O, Wu J, Cropek DM, and Banta S. Monitoring the conformational changes of an intrinsically disordered peptide using a quartz crystal microbalance. Protein Sci. 2011 May;20(5):925-30. DOI:10.1002/pro.625 | PubMed ID:21416544 | HubMed [Shur-ProtSci-2011]

Gao, S., Simon, M.J., Hue, C.D., Morrison III, B., and Banta, S. (2011) “An unusual cell penetrating peptide identified using a plasmid display-based functional selection platform” ACS Chemical Biology 6(5) 484-491 (Recommended by Faculty of 1000, Featured in Biotechniques News).

  1. Gao S, Simon MJ, Hue CD, Morrison B 3rd, and Banta S. An unusual cell penetrating peptide identified using a plasmid display-based functional selection platform. ACS Chem Biol. 2011 May 20;6(5):484-91. DOI:10.1021/cb100423u | PubMed ID:21291271 | HubMed [Gao-ACSChemBiol-2011]

Simon, M.J., Kang, W.H., Gao, S., Banta, S., and Morrison III, B. (2011) “TAT is not capable of transcellular delivery across an intact endothelial monolayer in vitro” Annals of Biomedical Engineering 39(1) 394-401.

  1. Simon MJ, Kang WH, Gao S, Banta S, and Morrison B 3rd. TAT is not capable of transcellular delivery across an intact endothelial monolayer in vitro. Ann Biomed Eng. 2011 Jan;39(1):394-401. DOI:10.1007/s10439-010-0144-x | PubMed ID:20737289 | HubMed [Simon-AnnalBiomedEng-2011]

Glykys, D.J., Szilvay, G.R., Tortosa, P., Suarez Diez, M., Jaramillo, A., and Banta, S. (2011) “Pushing the limits of automatic computational protein design: computational design, expression, and characterization of a large synthetic protein based on a fungal laccase scaffold” Systems and Synthetic Biology 5(1-2) 45-58.

  1. Glykys DJ, Szilvay GR, Tortosa P, Suárez Diez M, Jaramillo A, and Banta S. Pushing the limits of automatic computational protein design: design, expression, and characterization of a large synthetic protein based on a fungal laccase scaffold. Syst Synth Biol. 2011 Jun;5(1-2):45-58. DOI:10.1007/s11693-011-9080-9 | PubMed ID:22654993 | HubMed [Glykys-SystSynthBiol-2011]

Gao, S., Simon, M.J., Morrison III, B., and Banta, S. (2010) “A plasmid display platform for the selection of peptides exhibiting a functional cell-penetrating phenotype” Biotechnology Progress 26(6) 1796-1800.

  1. Gao S, Simon MJ, Morrison B 3rd, and Banta S. A plasmid display platform for the selection of peptides exhibiting a functional cell-penetrating phenotype. Biotechnol Prog. 2010 Nov-Dec;26(6):1796-800. DOI:10.1002/btpr.490 | PubMed ID:20938973 | HubMed [Gao-BiotechnolProg-2010]

Simon, M.J., Kang, W.H., Gao, S., Banta, S., and Morrison III, B. (2010) “Increased delivery of TAT across an endothelial monolayer following ischemic injury” Neuroscience Letters 486(1) 1-4.

  1. Simon MJ, Kang WH, Gao S, Banta S, and Morrison B 3rd. Increased delivery of TAT across an endothelial monolayer following ischemic injury. Neurosci Lett. 2010 Dec 3;486(1):1-4. DOI:10.1016/j.neulet.2010.09.029 | PubMed ID:20851169 | HubMed [Simon-NeuroscieLett-2010]

Wu, J., Cropek, D.M., West, A.C. and Banta, S. (2010) “Development of a troponin I biosensor using a peptide obtained through phage display” Analytical Chemistry 82(19) 8235-8243.

  1. Wu J, Cropek DM, West AC, and Banta S. Development of a troponin I biosensor using a peptide obtained through phage display. Anal Chem. 2010 Oct 1;82(19):8235-43. DOI:10.1021/ac101657h | PubMed ID:20831206 | HubMed [Wu-AnalChem-2010]

Campbell, E., Wheeldon, I.R., and Banta, S. (2010) “Broadening the cofactor specificity of a thermostable alcohol dehydrogenase using rational protein design introduces novel kinetic transient behavior” Biotechnology and Bioengineering 107(5) 763-774.

  1. Campbell E, Wheeldon IR, and Banta S. Broadening the cofactor specificity of a thermostable alcohol dehydrogenase using rational protein design introduces novel kinetic transient behavior. Biotechnol Bioeng. 2010 Dec 1;107(5):763-74. DOI:10.1002/bit.22869 | PubMed ID:20632378 | HubMed [Campbell-BiotechnolBioeng-2010]

Lu, H.D., Wheeldon, I.R., and Banta, S. (2010) “Catalytic biomaterials: Engineering organophosphate hydrolase to form self-assembling enzymatic hydrogels” Protein Engineering, Design and Selection 23(7) 559-566.

  1. Lu HD, Wheeldon IR, and Banta S. Catalytic biomaterials: engineering organophosphate hydrolase to form self-assembling enzymatic hydrogels. Protein Eng Des Sel. 2010 Jul;23(7):559-66. DOI:10.1093/protein/gzq026 | PubMed ID:20457694 | HubMed [Lu-PEDS-2010]

Blenner, M.A., Shur, O., Szilvay, G.R., Cropek, D.M., and Banta, S. (2010) “Calcium-induced folding of a beta roll motif requires C-terminal entropic stabilization” Journal of Molecular Biology 400(2) 244-256.

  1. Blenner MA, Shur O, Szilvay GR, Cropek DM, and Banta S. Calcium-induced folding of a beta roll motif requires C-terminal entropic stabilization. J Mol Biol. 2010 Jul 9;400(2):244-56. DOI:10.1016/j.jmb.2010.04.056 | PubMed ID:20438736 | HubMed [Blenner-JMolBiol-2010]

Banta, S., Wheeldon, I.R., and Blenner, M. (2010) “Protein engineering in the development of functional hydrogels” Annual Review of Biomedical Engineering 12 176-186.

  1. Banta S, Wheeldon IR, and Blenner M. Protein engineering in the development of functional hydrogels. Annu Rev Biomed Eng. 2010 Aug 15;12:167-86. DOI:10.1146/annurev-bioeng-070909-105334 | PubMed ID:20420519 | HubMed [Banta-AnnRevBME-2010]

Park, J.P., Cropek, D.M., and Banta, S. (2010) “High affinity peptides for the recognition of the heart disease biomarker troponin I using phage display” Biotechnology and Bioengineering 105(4) 678-686.

  1. Park JP, Cropek DM, and Banta S. High affinity peptides for the recognition of the heart disease biomarker troponin I identified using phage display. Biotechnol Bioeng. 2010 Mar 1;105(4):678-86. DOI:10.1002/bit.22597 | PubMed ID:19891006 | HubMed [Park-BiotechnolBioeng-2009]

Szilvay, G.R., Blenner, M.A., Shur, O., Cropek, D.M., and Banta, S. (2009) “A FRET-based method for probing the calcium-dependent conformational behavior of an intrinsically disordered beta roll domain from the Bordetella pertussis adenylate cyclase” Biochemistry 48(47) 11273-11282.

  1. Szilvay GR, Blenner MA, Shur O, Cropek DM, and Banta S. A FRET-based method for probing the conformational behavior of an intrinsically disordered repeat domain from Bordetella pertussis adenylate cyclase. Biochemistry. 2009 Dec 1;48(47):11273-82. DOI:10.1021/bi901447j | PubMed ID:19860484 | HubMed [Szilvay-Biochem-2009]

Wheeldon, I.R., Campbell, E. and Banta, S. (2009) “A chimeric fusion protein engineered with disparate functionalities— enzymatic activity and self assembly” Journal of Molecular Biology 392(1) 129-142.

  1. Wheeldon IR, Campbell E, and Banta S. A chimeric fusion protein engineered with disparate functionalities-enzymatic activity and self-assembly. J Mol Biol. 2009 Sep 11;392(1):129-42. DOI:10.1016/j.jmb.2009.06.075 | PubMed ID:19577577 | HubMed [Wheeldon-JMolBiol-2009]

Chockalingam, K., Lu, H.D., and Banta, S. (2009) “Development of a bacteriophage-based system for the selection of short structured peptides” Analytical Biochemistry 388(1) 122-127.

  1. Chockalingam K, Lu HD, and Banta S. Development of a bacteriophage-based system for the selection of structured peptides. Anal Biochem. 2009 May 1;388(1):122-7. DOI:10.1016/j.ab.2009.01.042 | PubMed ID:19454225 | HubMed [Chockalingam-AnalBiochem-2009]

Simon, M.J., Gao, S., Kang, W.H., Banta, S., and Morrison III, B. (2009) “TAT-mediated intracellular protein delivery to primary brain cells is dependent on glycosaminoglycan expression” Biotechnology and Bioengineering 104(1) 10-19.

  1. Simon MJ, Gao S, Kang WH, Banta S, and Morrison B 3rd. TAT-mediated intracellular protein delivery to primary brain cells is dependent on glycosaminoglycan expression. Biotechnol Bioeng. 2009 Sep 1;104(1):10-9. DOI:10.1002/bit.22377 | PubMed ID:19449355 | HubMed [Simon-BiotechnolBioeng-2009]

Gao, S., Simon, M.J., Morrison III, B., and Banta, S. (2009) “Bifunctional chimeric fusion proteins engineered for DNA delivery: Optimization of the protein to DNA ratio” Biochimica et Biophysica Acta (General Subjects) 1790(3) 198-207.

  1. Gao S, Simon MJ, Morrison B 3rd, and Banta S. Bifunctional chimeric fusion proteins engineered for DNA delivery: optimization of the protein to DNA ratio. Biochim Biophys Acta. 2009 Mar;1790(3):198-207. DOI:10.1016/j.bbagen.2009.01.001 | PubMed ID:19402206 | HubMed [Gao-BBA-2009]

Glykys, D.J., and Banta, S. (2009) “Metabolic control analysis of an enzymatic biofuel cell” Biotechnology and Bioengineering 102(6) 1624-1635.

  1. Glykys DJ and Banta S. Metabolic control analysis of an enzymatic biofuel cell. Biotechnol Bioeng. 2009 Apr 15;102(6):1624-35. DOI:10.1002/bit.22199 | PubMed ID:19061242 | HubMed [Glykys-BiotechnolBioeng-2009]

Chen, X.J., West, A.C., Cropek, D.M., and Banta, S. (2008) “Detection of the superoxide radical anion using various alkanethiol monolayers and immobilized cytochrome c” Analytical Chemistry 80(24) 9622-9629.

  1. Chen XJ, West AC, Cropek DM, and Banta S. Detection of the superoxide radical anion using various alkanethiol monolayers and immobilized cytochrome c. Anal Chem. 2008 Dec 15;80(24):9622-9. DOI:10.1021/ac800796b | PubMed ID:19072268 | HubMed [Chen-AnalChem-2008]

Wheeldon, I.R., Gallaway, J.W., Calabrese Barton, S., and Banta, S. (2008) “Bioelectrocatalytic hydrogels from electron-conducting metallopolypeptides coassembled with bifunctional enzymatic building blocks” Proceedings of the National Academy of Sciences of the United States of America 105(40) 15275-15280.

  1. Wheeldon IR, Gallaway JW, Barton SC, and Banta S. Bioelectrocatalytic hydrogels from electron-conducting metallopolypeptides coassembled with bifunctional enzymatic building blocks. Proc Natl Acad Sci U S A. 2008 Oct 7;105(40):15275-80. DOI:10.1073/pnas.0805249105 | PubMed ID:18824691 | HubMed [Wheeldon-PNAS-2008]

Blenner M.A., and Banta, S. (2008) “Characterization of the 4D5Flu single chain antibody with a stimulus-responsive elastin-like peptide linker: A potential reporter of peptide linker conformation” Protein Science 17(3) 527-536.

  1. Blenner MA and Banta S. Characterization of the 4D5Flu single-chain antibody with a stimulus-responsive elastin-like peptide linker: a potential reporter of peptide linker conformation. Protein Sci. 2008 Mar;17(3):527-36. DOI:10.1110/ps.073257308 | PubMed ID:18218715 | HubMed [Blenner-ProtSci-2008]

Gallaway, J., Wheeldon, I.R., Rincon, R., Atanassov, P., Banta, S., and Calabrese Barton, S. (2008) “Oxygen-Reducing Enzyme Cathodes Produced from SLAC, a Small Laccase from Streptomyces coelicolor, For Use at Neutral pH” Biosensors and Bioelectronics 23(8) 1229-1235.

  1. Gallaway J, Wheeldon I, Rincon R, Atanassov P, Banta S, and Barton SC. Oxygen-reducing enzyme cathodes produced from SLAC, a small laccase from Streptomyces coelicolor. Biosens Bioelectron. 2008 Mar 14;23(8):1229-35. DOI:10.1016/j.bios.2007.11.004 | PubMed ID:18096378 | HubMed [Gallaway-BiosensBioelectron-2008]

Wheeldon, I.R., Calabrese Barton, S., and Banta, S. (2007) “Bioactive Proteinaceous Hydrogels from Designed Bi-functional Building Blocks” Biomacromolecules 8(10) 2990-2994.

  1. Wheeldon IR, Barton SC, and Banta S. Bioactive proteinaceous hydrogels from designed bifunctional building blocks. Biomacromolecules. 2007 Oct;8(10):2990-4. DOI:10.1021/bm700858p | PubMed ID:17887795 | HubMed [Wheeldon-Biomacromol-2007]

Chockalingam, K., Blenner, M., and Banta, S. (2007) “Design and Application of Stimulus-Responsive Peptide Systems” Protein Engineering, Design and Selection 20(4) 155-161.

  1. Chockalingam K, Blenner M, and Banta S. Design and application of stimulus-responsive peptide systems. Protein Eng Des Sel. 2007 Apr;20(4):155-61. DOI:10.1093/protein/gzm008 | PubMed ID:17376876 | HubMed [Chockalingam-PEDS-2007]

Banta, S.*, Megeed, Z.*, Casali, M., Rege, K., and Yarmush, M.L. (2007) “Engineering Protein and Peptide Building Blocks for Nanotechnology” Journal of Nanoscience and Nanotechnology 7(2) 387-401 (*co-first authors).

  1. Banta S, Megeed Z, Casali M, Rege K, and Yarmush ML. Engineering protein and peptide building blocks for nanotechnology. J Nanosci Nanotechnol. 2007 Feb;7(2):387-401. PubMed ID:17450770 | HubMed [Casali-JNanosciNanotechnol-2007]


Harvard University (6 Total)

Casali, M., Banta, S., Zambonelli, C., Megeed, Z., and Yarmush, M.L. (2008) ”Site-directed mutagenesis of the hinge peptide from the Hemagglutinin protein: Enhancement of the pH-responsive conformational change” Protein Engineering, Design and Selection 21(6) 395-404.

  1. Casali M, Banta S, Zambonelli C, Megeed Z, and Yarmush ML. Site-directed mutagenesis of the hinge peptide from the hemagglutinin protein: enhancement of the pH-responsive conformational change. Protein Eng Des Sel. 2008 Jun;21(6):395-404. DOI:10.1093/protein/gzn018 | PubMed ID:18411225 | HubMed [Casali-PEDS-2008]

Banta, S.*, Vemula, M.*, Yokoyama, T., Jayaraman, A., Berthiaume, F., and Yarmush, M.L. (2007) “Contribution of Gene Expression to Metabolic Fluxes in Hypermetabolic Livers Induced Through Burn Injury and Cecal Ligation and Puncture in Rats” Biotechnology and Bioengineering 97(1) 118-137 (*co-first authors) (Featured in Editor’s Spotlight ).

  1. Banta S, Vemula M, Yokoyama T, Jayaraman A, Berthiaume F, and Yarmush ML. Contribution of gene expression to metabolic fluxes in hypermetabolic livers induced through burn injury and cecal ligation and puncture in rats. Biotechnol Bioeng. 2007 May 1;97(1):118-37. DOI:10.1002/bit.21200 | PubMed ID:17009336 | HubMed [Banta-BiotechnolBioeng-2007]

Banta, S., Yokoyama, T., Berthiaume, F., and Yarmush, M.L. (2005) “Effects of Dehydroepiandrosterone administration on rat hepatic metabolism following thermal injury” Journal of Surgical Research 127(2) 93-105.

  1. Banta S, Yokoyama T, Berthiaume F, and Yarmush ML. Effects of dehydroepiandrosterone administration on rat hepatic metabolism following thermal injury. J Surg Res. 2005 Aug;127(2):93-105. DOI:10.1016/j.jss.2005.01.001 | PubMed ID:15882877 | HubMed [Banta-JSurgRes-2005]

Yokoyama, T., Banta, S., Berthiaume, F., Nagrath, D., Tompkins, R.G., and Yarmush, M.L. (2005) “Evolution of intrahepatic carbon, nitrogen, and energy metabolism in a D-galactosamine-induced rat liver failure model” Metabolic Engineering 7(2) 88-103.

  1. Yokoyama T, Banta S, Berthiaume F, Nagrath D, Tompkins RG, and Yarmush ML. Evolution of intrahepatic carbon, nitrogen, and energy metabolism in a D-galactosamine-induced rat liver failure model. Metab Eng. 2005 Mar;7(2):88-103. DOI:10.1016/j.ymben.2004.09.003 | PubMed ID:15781418 | HubMed [Yokoyama-MetabolEng-2005]

Banta, S., Yokoyama, T., Berthiaume, F., and Yarmush, M.L. (2004) “Quantitative effects of thermal injury and insulin on the metabolism of the skeletal muscle using the perfused rat hindquarter preparation” Biotechnology and Bioengineering 88(5) 613-629.

  1. Banta S, Yokoyama T, Berthiaume F, and Yarmush ML. Quantitative effects of thermal injury and insulin on the metabolism of the skeletal muscle using the perfused rat hindquarter preparation. Biotechnol Bioeng. 2004 Dec 5;88(5):613-29. DOI:10.1002/bit.20258 | PubMed ID:15470703 | HubMed [Banta-BiotechnolBioeng-2004]

Yarmush, M.L. and Banta, S. (2003) “Metabolic Engineering: Advances in Modeling and Intervention in Health and Disease” Annual Review of Biomedical Engineering 5 349-381.

  1. Yarmush ML and Banta S. Metabolic engineering: advances in modeling and intervention in health and disease. Annu Rev Biomed Eng. 2003;5:349-81. DOI:10.1146/annurev.bioeng.5.031003.163247 | PubMed ID:14527316 | HubMed [Yarmush-AnnRevBME-2003]


Rutgers University (5 Total)

Sanli, G., Banta, S., Anderson, S., and Blaber, M. (2004) “Structural alteration of cofactor specificity in Corynebacterium 2,5-diketo-D-gluconic acid reductase” Protein Science 13(2) 504-512.

  1. Sanli G, Banta S, Anderson S, and Blaber M. Structural alteration of cofactor specificity in Corynebacterium 2,5-diketo-D-gluconic acid reductase. Protein Sci. 2004 Feb;13(2):504-12. DOI:10.1110/ps.03450704 | PubMed ID:14718658 | HubMed [Sanli-ProtSci-2004]

Banta, S., Boston, M., Jarnagin, A., and Anderson, S. (2002) “Mathematical modeling of in vitro enzymatic production of 2-keto-L-gulonic acid using NAD(H) or NADP(H) as cofactors” Metabolic Engineering 4(4) 273-284.

  1. Banta S, Boston M, Jarnagin A, and Anderson S. Mathematical modeling of in vitro enzymatic production of 2-Keto-L-gulonic acid using NAD(H) or NADP(H) as cofactors. Metab Eng. 2002 Oct;4(4):273-84. PubMed ID:12646322 | HubMed [Banta-MetabolEng-2002]

Banta, S., and Anderson, S. (2002) “Verification of a novel NADH-binding motif: Combinatorial mutagenesis of three amino acids in the cofactor binding pocket of Corynebacterium 2,5-diketo-D-gluconic acid reductase” Journal of Molecular Evolution 55(6) 623-631.

  1. Banta S and Anderson S. Verification of a novel NADH-binding motif: combinatorial mutagenesis of three amino acids in the cofactor-binding pocket of Corynebacterium 2,5-diketo-D-gluconic acid reductase. J Mol Evol. 2002 Dec;55(6):623-31. DOI:10.1007/s00239-002-2345-x | PubMed ID:12486521 | HubMed [Banta-JMolEvol-2002]

Banta, S., Swanson, B.A., Wu, S., Jarnagin, A., and Anderson, S. (2002) “Optimizing an artificial metabolic pathway: Engineering the cofactor specificity of Corynebacterium 2,5-diketo-D-gluconic acid reductase for use in vitamin C biosynthesis” Biochemistry 41(20) 6226-6236.

  1. Banta S, Swanson BA, Wu S, Jarnagin A, and Anderson S. Optimizing an artificial metabolic pathway: engineering the cofactor specificity of Corynebacterium 2,5-diketo-D-gluconic acid reductase for use in vitamin C biosynthesis. Biochemistry. 2002 May 21;41(20):6226-36. PubMed ID:12009883 | HubMed [Banta-Biochem-2002]

Banta, S., Swanson, B.A., Wu, S., Jarnagin, A., and Anderson, S. (2002) “Alteration of the specificity of the cofactor-binding pocket of Corynebacterium 2,5-diketo-D-gluconic acid reductase A” Protein Engineering 15(2) 131-140. (Featured on cover)

  1. Banta S, Swanson BA, Wu S, Jarnagin A, and Anderson S. Alteration of the specificity of the cofactor-binding pocket of Corynebacterium 2,5-diketo-D-gluconic acid reductase A. Protein Eng. 2002 Feb;15(2):131-40. PubMed ID:11917149 | HubMed [Banta-PEDS-2002]


Book Chapters and Other Articles

Atanassov, P., Apblett, C., Banta, S. Brozik, S., Calabrese Barton, S., Cooney, M., Liaw, B. Y., Mukerjee, S., and Minteer, S.D. (2007) "Enzymatic Biofuel Cells" Interface 16(2) 28-31

Banta, S. (2006) "Protein Engineering" The Biomedical Engineering Handbook, 3rd Ed, Edited by J.D. Bronzino, CRC Press, Boca Raton, Florida.

Banta, S. and Zupke, C. (2006) "Metabolic Engineering" The Biomedical Engineering Handbook, 3rd Ed, Edited by J.D. Bronzino, CRC Press, Boca Raton, Florida.