BME103:T930 Group 3 l2: Difference between revisions

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<!--- Include the sequences of your forward and reverse primers. Explain why a disease allele will give a PCR product and the non-disease allele will not. --->
<!--- Include the sequences of your forward and reverse primers. Explain why a disease allele will give a PCR product and the non-disease allele will not. --->


1.) Forward primer: CTTC[G]ACCT
    Reverse primer: TCCA[G]CTTC <br>
2.) Forward primer: TGTT[A]CAGG
    Reverse primer: GGAC[A]TTGT <br><br>





Revision as of 22:24, 22 November 2012

BME 103 Fall 2012 Home
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Lab Write-Up 1
Lab Write-Up 2
Lab Write-Up 3
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OUR TEAM

Name: Lekha Anantuni
Role: R&D
Name: Rohan Kumar
Role(s)
Name: Kyle Stoneking
Role(s)
Name: Austin Cuaderno
Role(s)
Name: Josh Eger
Role(s)

LAB 2 WRITE-UP

Thermal Cycler Engineering

Our re-design is based upon the Open PCR system originally designed by Josh Perfetto and Tito Jankowski.


System Design


Key Features


Instructions





Protocols

Materials


PCR Protocol



DNA Measurement Protocol



Research and Development

Background on Disease Markers


1.) The amyloid Beta precursor protein for Alzheimer's -
rs63751263 (http://omim.org/entry/104760#0008)
AGACGGAGGAGATCTCTGAAGTGAAG [A/C] TGGATGCAGAATTCCGACATGACTC

2.) Ubiquitin-like Modifier-activating enzyme for Spinal muscular atrophy -
rs80356547(http://omim.org/entry/314370#0002)
GATGGCGTGGCCAATGCCCTGGACAA [C/T] GTCCATGCCCGTCAGTTTGGAGGCG

Primer Design


1.) Forward primer: CTTC[G]ACCT

   Reverse primer: TCCA[G]CTTC 

2.) Forward primer: TGTT[A]CAGG

   Reverse primer: GGAC[A]TTGT 


Illustration


Exponential amplification of a specific gene.