BIOL398-03/S13:Week 13: Difference between revisions
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=== Tasks === | === Tasks === | ||
* Download the matlab files | |||
* [http://openwetware.org/images/9/94/Estimation_driver.m estimation driver code] | ** [http://openwetware.org/images/9/94/Estimation_driver.m estimation driver code] | ||
* [http://openwetware.org/images/e/e1/General_parameter_estimation_function.m estimation function] | ** [http://openwetware.org/images/e/e1/General_parameter_estimation_function.m estimation function] | ||
* [http://openwetware.org/images/f/f3/General_least_squares_error.m least squares error function] | ** [http://openwetware.org/images/f/f3/General_least_squares_error.m least squares error function] | ||
* [http://openwetware.org/images/f/f5/General_network_dynamics.m dynamical system function] | ** [http://openwetware.org/images/f/f5/General_network_dynamics.m dynamical system function] | ||
* [http://openwetware.org/images/7/77/Full_schade_data.xls sample data input file] | ** [http://openwetware.org/images/7/77/Full_schade_data.xls sample data input file] | ||
* Open the estimation_driver script in matlab and run it. | |||
* Paste the graphs of the individual genes into a powerpoint presentation. | |||
* Upload your powerpoint to openwetware. | |||
== Shared Journal Assignment == | == Shared Journal Assignment == | ||
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Look over the excel workbook input file. | Look over the excel workbook input file. | ||
* How might you change the network to add more genes/transcription factors? | |||
* How might you run a computer experiment to examine the deletion of a gene? | |||
Return to the chemostat. | Return to the chemostat. | ||
* In concept, without worrying about creating matlab code, how might you use the least squares technique to get parameters from the ter Schure et al experiments? | |||
Revision as of 08:42, 16 April 2013
This journal entry is due on Friday, April 19 at midnight PDT (Thursday night/Friday morning). NOTE new due date and that the server records the time as Eastern Daylight Time (EDT). Therefore, midnight will register as 03:00.
Individual Journal Assignment
- Store this journal entry as "username Week 13" (i.e., this is the text to place between the square brackets when you link to this page).
- Create the following set of links. (HINT: you can do all of this easily by adding them to your template and then using the template on your pages.)
- Link to your journal entry from your user page.
- Link back from your journal entry to your user page.
- Link to this assignment from your journal entry.
- Don't forget to add the "BIOL398-03/S13" category to the end of your wiki page.
Tasks
- Download the matlab files
- Open the estimation_driver script in matlab and run it.
- Paste the graphs of the individual genes into a powerpoint presentation.
- Upload your powerpoint to openwetware.
- Store your journal entry in the shared Class Journal Week 13 page. If this page does not exist yet, go ahead and create it (congratulations on getting in first :) )
- Link to your journal entry from your user page.
- Link back from the journal entry to your user page.
- Sign your portion of the journal with the standard wiki signature shortcut (
~~~~). - Add the "BIOL398-03/S13" category to the end of the wiki page (if someone has not already done so).
Reflection
Look over the excel workbook input file.
- How might you change the network to add more genes/transcription factors?
- How might you run a computer experiment to examine the deletion of a gene?
Return to the chemostat.
- In concept, without worrying about creating matlab code, how might you use the least squares technique to get parameters from the ter Schure et al experiments?
