Difference between revisions of "BE.180:Syllabus"

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[http://student.mit.edu/catalog/search.cgi?search=be.180 Catalog entry]<br>
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{{Template:BE.180}}
When and where: TR12 (36-156)
 
  
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!MODULE
 
!MODULE
 
!DAY
 
!DAY
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!TA
 
!TA
 
!Concept
 
!Concept
 +
!Assignment
 
|--
 
|--
 
| 1
 
| 1
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| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[BE.180:Abstraction1 | Abstraction: From DNA to Parts]]
 
| [[BE.180:Abstraction1 | Abstraction: From DNA to Parts]]
 +
|
 
|--
 
|--
 
| 2
 
| 2
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| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[BE.180:Abstraction2 | Abstraction: From Parts to Devices ]]
 
| [[BE.180:Abstraction2 | Abstraction: From Parts to Devices ]]
 +
| Assignment 1 released
 
|--
 
|--
 
| 3
 
| 3
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| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[BE.180:Devices1 | Device Modeling & Simplification]]
 
| [[BE.180:Devices1 | Device Modeling & Simplification]]
 +
|
 
|--
 
|--
 
|
 
|
! colspan="5" | President's Day holiday Feb 20, No class Tues Feb 21(Mon schedule)  
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! colspan="6" | President's Day holiday Feb 20, No class Tues Feb 21(Mon schedule)  
 
|--
 
|--
| *
+
| GL
 
| 1
 
| 1
 
| Thurs Feb 23
 
| Thurs Feb 23
| [[Drew Endy | DE]]
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| [[Tom Knight | TK]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[BE.180:TK | Tom Knight lecture]]
 
| [[BE.180:TK | Tom Knight lecture]]
 +
| Assignment 1 due
 
|--
 
|--
| *
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| GL
 
| 2
 
| 2
 
| Tues Feb 28
 
| Tues Feb 28
| [[Drew Endy | DE]]
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| [[Gerald J Sussman | GJS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[BE.180:GJS | Gerry Sussman lecture]]
 
| [[BE.180:GJS | Gerry Sussman lecture]]
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| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[BE.180:DeviceAnalysis | Device Analysis]]
 
| [[BE.180:DeviceAnalysis | Device Analysis]]
 +
| Assignment 2 released
 
|--
 
|--
 
| 3
 
| 3
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| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[BE.180:Decomposition1 | Decomposition of Complex Problems]] (3/10 is last day to add)
 
| [[BE.180:Decomposition1 | Decomposition of Complex Problems]] (3/10 is last day to add)
 +
| Assignment 2 due; 3 released
 
|--
 
|--
 
| 4
 
| 4
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| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180:Decomposition2 | From Systems to DNA]]
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| [[BE.180:Devices | Genetic Devices & Device Modeling]]
 +
| Assignment 3 due
 
|--
 
|--
| 5
+
| D
 
| 1
 
| 1
 
| Tues Mar 21
 
| Tues Mar 21
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180:SequenceOptimization | Sequence Optimization]]
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| [[BE.180:Discussion1 | Discussion & Review]]
 
|--
 
|--
| 5
+
| E
| 2
+
| 1
 
| Thurs Mar 23
 
| Thurs Mar 23
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
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! colspan="6" | Spring Break Mar 27-31
 
! colspan="6" | Spring Break Mar 27-31
 
|--
 
|--
| 0
+
| 5
| 14
+
| 1
 
| Tues Apr 4
 
| Tues Apr 4
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180:DetectIdent | DNA Detection & Identification]]
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| [[BE.180:SequenceOptimization | Sequence Optimization]]
 
|--
 
|--
| 0
+
| 5
| 15
+
| 2
 
| Thurs Apr 6
 
| Thurs Apr 6
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180: ]]
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| [[BE.180:DetectIdent | DNA Detection & Identification]]
 +
| Assignment 4 released
 
|--
 
|--
| 0
+
| 6
| 16
+
| 1
 
| Tues Apr 11
 
| Tues Apr 11
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180: ]]
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| [[BE.180:SpaceTime1 | Space and Time Systems]]
 
|--
 
|--
| 0
+
| 6
| 17
+
| 2
 
| Thurs Apr 13
 
| Thurs Apr 13
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180: ]]
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| [[BE.180:SpaceTime2 | Programming Space & Time Systems]]
 +
| Assignment 4 due
 
|--
 
|--
|
+
! colspan="6" | Patriot's day holiday April 17-18
|
 
! colspan="4" | Patriot's day holiday April 17-18
 
 
|--
 
|--
| 0
+
| 7
| 18
+
| 1
 
| Thurs Apr 20
 
| Thurs Apr 20
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180: ]]
+
| [[BE.180:SpaceTime2 | Programming Space & Time Systems]]
 +
|
 
|--
 
|--
| 0
+
| 7
| 19
+
| 2
 
| Tues Apr 25
 
| Tues Apr 25
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180: ]]
+
| [[User:Yeem/BE.180 notes/4-25 | Growing Point Language]]
 +
| Assignment 5 released
 
|--
 
|--
| colspan="6" |
+
| 7
|--
+
| 3
| 0
 
| 20
 
 
| Thurs Apr 27
 
| Thurs Apr 27
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180: ]] (4/27 is last day to drop)
+
| [[BE.180:CCL | "Crop Circle" Language]] (4/27 is last day to drop)
 
|--
 
|--
| 0
+
| 7
| 21
+
| 4
 
| Tues May 2
 
| Tues May 2
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180: ]]
+
| [[BE.180:Modeling | ]]
 
|--
 
|--
| 0
+
| 7
| 22
+
| 5
 
| Thurs May 4
 
| Thurs May 4
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180: ]]
+
| <!-- old link: [[BE.180:Testing | ]] -->[[User:Yeem/BE.180 notes/Semester review|Semester review]]
 +
| Assignment 5 due
 
|--
 
|--
| 0
+
| D
| 23
+
| 2
 
| Tues May 9
 
| Tues May 9
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180: ]]
+
| [[BE.180:Discussion2 | ]]
 
|--
 
|--
| 0
+
| E
| 24
+
| 2
 
| Thurs May 11
 
| Thurs May 11
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
 
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180:Exam2 | Exam2]]
+
| [[BE.180:Exam2 | Exam2]] (comprehensive through 4 May lecture)
 
|--
 
|--
| 0
+
| EOC
| 25
+
| 1
 
| Tues May 16
 
| Tues May 16
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
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| [[BE.180:LDOC | Course Evaluation & Wrap-Up]]
 
| [[BE.180:LDOC | Course Evaluation & Wrap-Up]]
 
|--
 
|--
| 0
+
| -
| 26
+
| -
 
| Thurs May 18
 
| Thurs May 18
 
| No class
 
| No class

Latest revision as of 12:32, 4 May 2006

BE.180 Biological Engineering Programming

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Programming Tutorial        Biology Tutorial       


MODULE DAY DATE LECTURER TA Concept Assignment
1 1 Tues Feb 7 DE SS, LS Biological Engineering & Programming DNA
2 1 Thurs Feb 9 DE SS, LS Abstraction: From DNA to Parts
2 2 Tues Feb 14 DE SS, LS Abstraction: From Parts to Devices Assignment 1 released
3 1 Thurs Feb 16 DE SS, LS Device Modeling & Simplification
President's Day holiday Feb 20, No class Tues Feb 21(Mon schedule)
GL 1 Thurs Feb 23 TK SS, LS Tom Knight lecture Assignment 1 due
GL 2 Tues Feb 28 GJS SS, LS Gerry Sussman lecture
3 2 Thurs Mar 2 DE SS, LS Device Analysis Assignment 2 released
3 3 Tues Mar 7 DE SS, LS Device Composition
4 1 Thurs Mar 9 DE SS, LS Decomposition of Complex Problems (3/10 is last day to add) Assignment 2 due; 3 released
4 2 Tues Mar 14 DE SS, LS Devices, Revisited
4 3 Thurs Mar 16 DE SS, LS Genetic Devices & Device Modeling Assignment 3 due
D 1 Tues Mar 21 DE SS, LS Discussion & Review
E 1 Thurs Mar 23 DE SS, LS Exam 1 (covers through 16 March lecture)
Spring Break Mar 27-31
5 1 Tues Apr 4 DE SS, LS Sequence Optimization
5 2 Thurs Apr 6 DE SS, LS DNA Detection & Identification Assignment 4 released
6 1 Tues Apr 11 DE SS, LS Space and Time Systems
6 2 Thurs Apr 13 DE SS, LS Programming Space & Time Systems Assignment 4 due
Patriot's day holiday April 17-18
7 1 Thurs Apr 20 DE SS, LS Programming Space & Time Systems
7 2 Tues Apr 25 DE SS, LS Growing Point Language Assignment 5 released
7 3 Thurs Apr 27 DE SS, LS "Crop Circle" Language (4/27 is last day to drop)
7 4 Tues May 2 DE SS, LS
7 5 Thurs May 4 DE SS, LS Semester review Assignment 5 due
D 2 Tues May 9 DE SS, LS
E 2 Thurs May 11 DE SS, LS Exam2 (comprehensive through 4 May lecture)
EOC 1 Tues May 16 DE SS, LS Course Evaluation & Wrap-Up
- - Thurs May 18 No class