Difference between revisions of "20.109: Spring 2007 schedule"

From OpenWetWare
Jump to: navigation, search
 
(35 intermediate revisions by 2 users not shown)
Line 10: Line 10:
 
|'''TA'''
 
|'''TA'''
 
|'''LAB'''
 
|'''LAB'''
 +
|'''note'''
 
|--
 
|--
 
|  
 
|  
 
|  
 
|  
| Tues Feb 6  
+
| Tue Feb 6  
 
| [[Natalie Kuldell | NK]]
 
| [[Natalie Kuldell | NK]]
 
|  
 
|  
 
| [[20.109(S07):Lab tour | Orientation]]
 
| [[20.109(S07):Lab tour | Orientation]]
 +
|
 
|--
 
|--
| colspan="6" |
+
| colspan="7" |
 
|--
 
|--
 
| 1
 
| 1
 
| 1
 
| 1
| Thurs Feb 8
+
| Thur Feb 8
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sean Clarke | SC]]
 
| [[Sean Clarke | SC]]
 
| [[20.109(S07):Start-up genome engineering | Start-up genome engineering]]
 
| [[20.109(S07):Start-up genome engineering | Start-up genome engineering]]
 +
| [[Media:20109080207.pdf | PDF]] of class discussion slides
 
|--
 
|--
 
| 1
 
| 1
 
| 2
 
| 2
| Tues Feb 13  
+
| Tue Feb 13  
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sean Clarke | SC]]
 
| [[Sean Clarke | SC]]
 
| [[20.109(S07): Agarose gel electrophoresis| Agarose gel electrophoresis]]
 
| [[20.109(S07): Agarose gel electrophoresis| Agarose gel electrophoresis]]
 +
| [[Media:20109M1L2.pdf | PDF]] of class notes
 
|--
 
|--
 
| 1
 
| 1
 
| 3
 
| 3
| Thurs Feb 15
+
| Thur Feb 15
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sean Clarke | SC]]
 
| [[Sean Clarke | SC]]
 
| [[20.109(S07): DNA ligation and bacterial transformation| DNA ligation and bacterial transformation]]
 
| [[20.109(S07): DNA ligation and bacterial transformation| DNA ligation and bacterial transformation]]
 +
|
 
|--
 
|--
 
|
 
|
 
|
 
|
! colspan="3" | President's Day Feb 19
+
! colspan="4" | President's Day Feb 19
| '''No lab Feb 20 (Mon schedule) or Feb 21'''
+
| '''No lab Feb 20 or Feb 21'''
 
|--
 
|--
 
| 1
 
| 1
 
| 4
 
| 4
| Thurs Feb 22
+
| Thur Feb 22
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sean Clarke | SC]]
 
| [[Sean Clarke | SC]]
 
| [[20.109(S07): Examine candidate clones| Examine candidate clones]]
 
| [[20.109(S07): Examine candidate clones| Examine candidate clones]]
 +
| guest lecture from Harlan Breindel
 
|--
 
|--
 
| 1
 
| 1
 
| 5
 
| 5
| Tues Feb 27
+
| Tue Feb 27
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sean Clarke | SC]]
 
| [[Sean Clarke | SC]]
 
| [[20.109(S07): Western analysis| Western analysis]]
 
| [[20.109(S07): Western analysis| Western analysis]]
 +
| [[Media:2010927022007.pdf | PDF]] of class discussion slides
 
|--
 
|--
 
| 1
 
| 1
 
| 6
 
| 6
| Thurs Mar 1
+
| Thur Mar 1
 
| [[Drew Endy | DE]]
 
| [[Drew Endy | DE]]
 
| [[Sean Clarke | SC]]
 
| [[Sean Clarke | SC]]
 
| [[20.109(S07): Probe western| Probe western]]
 
| [[20.109(S07): Probe western| Probe western]]
 +
| first draft of [[20.109(S07): Genome engineering essay| your writing assignment]] due before lab, [[Media:2010901032007.pdf | PDF]] of class slides
 
|--
 
|--
| colspan="6" |
+
| colspan="7" |
 
|--
 
|--
 
| 2
 
| 2
 
| 1
 
| 1
| Tues Mar 6  
+
| Tue Mar 6  
 
| AJ
 
| AJ
 
| [[Yoon Sung Nam | YSN]]
 
| [[Yoon Sung Nam | YSN]]
 
| [[20.109(S07): Start-up signal measurement| Start-up signal measurement]]
 
| [[20.109(S07): Start-up signal measurement| Start-up signal measurement]]
 +
|
 
|--
 
|--
 
| 2
 
| 2
 
| 2
 
| 2
| Thurs Mar 8
+
| Thur Mar 8
 
| AJ
 
| AJ
 
| [[Yoon Sung Nam | YSN]]
 
| [[Yoon Sung Nam | YSN]]
 
| [[20.109(S07): Measuring calcium in vitro| Measuring calcium in vitro]]
 
| [[20.109(S07): Measuring calcium in vitro| Measuring calcium in vitro]]
 +
|
 
|--
 
|--
 
| 2
 
| 2
 
| 3
 
| 3
| Tues Mar 13
+
| Tue Mar 13
 
| AJ
 
| AJ
 
| [[Yoon Sung Nam | YSN]]
 
| [[Yoon Sung Nam | YSN]]
 
| [[20.109(S07): Lipofection| Lipofection]]
 
| [[20.109(S07): Lipofection| Lipofection]]
 +
|
 
|--
 
|--
 
| 2
 
| 2
 
| 4
 
| 4
| Thurs Mar 15
+
| Thur Mar 15
 
| AJ
 
| AJ
 
| [[Yoon Sung Nam | YSN]]
 
| [[Yoon Sung Nam | YSN]]
 
| [[20.109(S07): Measuring calcium in vivo| Measuring calcium in vivo]]
 
| [[20.109(S07): Measuring calcium in vivo| Measuring calcium in vivo]]
 +
|
 
|--
 
|--
 
| 2
 
| 2
 
| 5
 
| 5
| Tues Mar 20  
+
| Tue Mar 20  
 
| AJ
 
| AJ
 
| [[Yoon Sung Nam | YSN]]
 
| [[Yoon Sung Nam | YSN]]
 
| [[20.109(S07): Calcium signaling in vivo| Calcium signaling in vivo]]
 
| [[20.109(S07): Calcium signaling in vivo| Calcium signaling in vivo]]
 +
|
 
|--
 
|--
 
| 2
 
| 2
 
| 6
 
| 6
| Thurs Mar 22
+
| Thur Mar 22
 
| AJ
 
| AJ
 
| [[Yoon Sung Nam | YSN]]
 
| [[Yoon Sung Nam | YSN]]
| [[BE.109:Presenting your work | Student presentations]]
+
| [[20.109(S07): Student presentations, module 2 | Student presentations]]
 +
|
 
|--
 
|--
 
|
 
|
 
|
 
|
! colspan="3" | Spring Break Mar 26-30
+
! colspan="4" | Spring Break Mar 26-30
 
| '''No lab all week'''
 
| '''No lab all week'''
 
|--
 
|--
| colspan="6" |
+
| colspan="7" |
 
|--
 
|--
 
| 3
 
| 3
 
| 1
 
| 1
| Tues Apr 3
+
| Tue Apr 3
 
| [[Natalie Kuldell | NK]]
 
| [[Natalie Kuldell | NK]]
 
| [[Andrea Tentner | AT]]
 
| [[Andrea Tentner | AT]]
 
| [[20.109(S07): Start-up expression engineering| Start-up expression engineering]]
 
| [[20.109(S07): Start-up expression engineering| Start-up expression engineering]]
 +
| [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect1 handout.pdf| PDF]] of M3D1 lecture slides 
 
|--
 
|--
 
| 3
 
| 3
 
| 2
 
| 2
| Thurs Apr 5
+
| Thur Apr 5
 
| [[Natalie Kuldell | NK]]
 
| [[Natalie Kuldell | NK]]
 
| [[Andrea Tentner | AT]]
 
| [[Andrea Tentner | AT]]
|  
+
| [[20.109(S07): Yeast transformation| Yeast transformation]]
 +
| [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect2 handout.pdf| PDF]] of M3D2 lecture slides
 
|--
 
|--
 
| 3
 
| 3
 
| 3
 
| 3
| Tues Apr 10  
+
| Tue Apr 10  
 
| [[Natalie Kuldell | NK]]
 
| [[Natalie Kuldell | NK]]
 
| [[Andrea Tentner | AT]]
 
| [[Andrea Tentner | AT]]
|  
+
| [[20.109(S07): Colony PCR| Colony PCR]]
 +
| guest lecture: Susan Ruff and her slides are [[Media:Macintosh HD-Users-nkuldell-Desktop-What is I M R D Anyway.pdf| here]]
 
|--
 
|--
 
| 3
 
| 3
 
| 4
 
| 4
| Thurs Apr 12  
+
| Thur Apr 12  
 
| [[Natalie Kuldell | NK]]
 
| [[Natalie Kuldell | NK]]
 
| [[Andrea Tentner | AT]]
 
| [[Andrea Tentner | AT]]
|  
+
| [[20.109(S07): Screen for phenotypes, isolate RNA| Screen for phenotypes, isolate RNA]]
 +
| [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect3 handout.pdf | PDF]] of M3D4 lecture slides
 
|--
 
|--
 
|
 
|
 
|
 
|
! colspan="3" | Patriot's Day April 16-17
+
! colspan="4" | Patriot's Day April 16-17
 
| '''No lab Apr 17 or Apr 18'''
 
| '''No lab Apr 17 or Apr 18'''
 
|--
 
|--
 
| 3
 
| 3
 
| 5
 
| 5
| Thurs Apr 19
+
| Thur Apr 19
 
| [[Natalie Kuldell | NK]]
 
| [[Natalie Kuldell | NK]]
 
| [[Andrea Tentner | AT]]
 
| [[Andrea Tentner | AT]]
|  
+
| [[20.109(S07): cDNA synthesis and microarray| cDNA synthesis and microarray]]
 +
| [[Media:109(S07)lect4 handout.pdf| PDF]] of M3D5 lecture slides
 
|--
 
|--
 
| 3
 
| 3
 
| 6
 
| 6
| Tues Apr 24
+
| Tue Apr 24
 
| [[Natalie Kuldell | NK]]
 
| [[Natalie Kuldell | NK]]
 
| [[Andrea Tentner | AT]]
 
| [[Andrea Tentner | AT]]
|  
+
| [[20.109(S07): Microarray data analysis| Microarray data analysis]]
 +
| guest lecture: Rebecca Fry <br> and her slides are [[Media:Macintosh HD-Users-nkuldell-Desktop-dataanalysis20071.pdf| here]]
 
|--
 
|--
| colspan="6" |
+
| colspan="7" |
 
|--
 
|--
 
| 4
 
| 4
 
| 1
 
| 1
| Thurs Apr 26
+
| Thur Apr 26
 
| AB
 
| AB
 
| [[Chandni Valiathan | CV]]
 
| [[Chandni Valiathan | CV]]
 +
| [[20.109(S07):Bio-material engineering/Screening library | Screening library]]
 
|  
 
|  
 
|--
 
|--
 
| 4
 
| 4
 
| 2
 
| 2
| Tues May 1  
+
| Tue May 1  
 
| AB
 
| AB
 
| [[Chandni Valiathan | CV]]
 
| [[Chandni Valiathan | CV]]
|  
+
| [[20.109(S07): Bio-material engineering/Optimizing panning | Optimizing panning]]
 +
| first draft of [[20.109(S07): Expression engineering report| your writing assignment]] due Monday April 30th by 9AM
 
|--
 
|--
 
| 4
 
| 4
 
| 3
 
| 3
| Thurs May 3
+
| Thur May 3
 
| AB
 
| AB
 
| [[Chandni Valiathan | CV]]
 
| [[Chandni Valiathan | CV]]
 +
| [[20.109(S07): Bio-material engineering/Rescreening gold binders | Rescreening gold binders]]
 
|  
 
|  
 
|--
 
|--
 
| 4
 
| 4
 
| 4
 
| 4
| Tues May 8
+
| Tue May 8
 
| AB
 
| AB
 
| [[Chandni Valiathan | CV]]
 
| [[Chandni Valiathan | CV]]
|  
+
| [[20.109(S07): Bio-material engineering/PCR of gold binding candidates | PCR of gold binding candidates]]
 +
| Mod 3 lab reports returned for revision
 
|--
 
|--
 
| 4
 
| 4
 
| 5
 
| 5
| Thurs May 10
+
| Thur May 10
 
| AB
 
| AB
 
| [[Chandni Valiathan | CV]]
 
| [[Chandni Valiathan | CV]]
 +
| [[20.109 (S07): Research proposal, module 4| Student presentations]]
 
|  
 
|  
 
|--
 
|--
 
| 4
 
| 4
 
| 6
 
| 6
| Tues May 15  
+
| Tue May 15  
 
| AB
 
| AB
 
| [[Chandni Valiathan | CV]]
 
| [[Chandni Valiathan | CV]]
| [[BE.109:Presenting your work | Student presentations]]
+
| [[20.109(S07): Bio-material engineering/Sequence analysis | Analyze sequence data]]
 +
| Revised Mod 3 writing assignment due before lab<br> no lecture today
 
|--
 
|--
 
|
 
|
 
|
 
|
| Thurs May 18
+
| Thur May 17
 
|
 
|
 
|
 
|
 
| Lecture only, no lab
 
| Lecture only, no lab
 +
|
 
|}
 
|}
 
</div>
 
</div>

Latest revision as of 13:00, 23 April 2007


20.109: Laboratory Fundamentals of Biological Engineering

Macintosh HD-Users-nkuldell-Desktop-20.109template.png

Home        People        Schedule Spring 2007        Lab Basics        OWW Basics       
Genome Engineering        Biophysical Signal Measurement        Expression Engineering        Biomaterial Engineering       

MODULE DAY DATE LECTURER TA LAB note
Tue Feb 6 NK Orientation
1 1 Thur Feb 8 DE SC Start-up genome engineering PDF of class discussion slides
1 2 Tue Feb 13 DE SC Agarose gel electrophoresis PDF of class notes
1 3 Thur Feb 15 DE SC DNA ligation and bacterial transformation
President's Day Feb 19 No lab Feb 20 or Feb 21
1 4 Thur Feb 22 DE SC Examine candidate clones guest lecture from Harlan Breindel
1 5 Tue Feb 27 DE SC Western analysis PDF of class discussion slides
1 6 Thur Mar 1 DE SC Probe western first draft of your writing assignment due before lab, PDF of class slides
2 1 Tue Mar 6 AJ YSN Start-up signal measurement
2 2 Thur Mar 8 AJ YSN Measuring calcium in vitro
2 3 Tue Mar 13 AJ YSN Lipofection
2 4 Thur Mar 15 AJ YSN Measuring calcium in vivo
2 5 Tue Mar 20 AJ YSN Calcium signaling in vivo
2 6 Thur Mar 22 AJ YSN Student presentations
Spring Break Mar 26-30 No lab all week
3 1 Tue Apr 3 NK AT Start-up expression engineering PDF of M3D1 lecture slides
3 2 Thur Apr 5 NK AT Yeast transformation PDF of M3D2 lecture slides
3 3 Tue Apr 10 NK AT Colony PCR guest lecture: Susan Ruff and her slides are here
3 4 Thur Apr 12 NK AT Screen for phenotypes, isolate RNA PDF of M3D4 lecture slides
Patriot's Day April 16-17 No lab Apr 17 or Apr 18
3 5 Thur Apr 19 NK AT cDNA synthesis and microarray PDF of M3D5 lecture slides
3 6 Tue Apr 24 NK AT Microarray data analysis guest lecture: Rebecca Fry
and her slides are here
4 1 Thur Apr 26 AB CV Screening library
4 2 Tue May 1 AB CV Optimizing panning first draft of your writing assignment due Monday April 30th by 9AM
4 3 Thur May 3 AB CV Rescreening gold binders
4 4 Tue May 8 AB CV PCR of gold binding candidates Mod 3 lab reports returned for revision
4 5 Thur May 10 AB CV Student presentations
4 6 Tue May 15 AB CV Analyze sequence data Revised Mod 3 writing assignment due before lab
no lecture today
Thur May 17 Lecture only, no lab