20.109(S13):Module 3

From OpenWetWare
Revision as of 11:24, 4 December 2012 by AgiStachowiak (talk | contribs) (Module 3)
Jump to: navigation, search

20.109(S13): Laboratory Fundamentals of Biological Engineering

S13 109-OWW-frontpage.jpg

Home        Schedule Spring 2013        Assignments       
DNA Engineering        Protein Engineering        Cell Engineering              

Module 3

Instructors: Shannon Hughes-Alford and Agi Stachowiak


S13 notes: This experiment will be largely unchanged from the S12 version, with three potential exceptions: (1) Viability analysis will be done after two days, and final analysis after one week (instead of 7 and 12 days, respectively), pending IAP pilot experiments, perhaps with media being changed daily rather than every other day; (2) Students may be required (rather than encouraged) to replicate the work of another team and pool samples, with hopes of getting high enough concentrations for the protein and proteoglycan (PG) assays (3) Beads will be washed before the PG assay to limit interference from media (just use phenol red-free media?)

What makes a cell become one type and not another? How can we influence this process, and why would we even want to? When faced with conflicting information – in our own experiments, or in the broader scientific literature – how do we determine what is credible? These are just some of the questions you will explore in the third and final module, all in the context of tissue engineering. The goal of tissue engineering (also called regenerative medicine) is to repair tissues damaged by acute trauma or disease. Repair is stimulated by insertion of a porous scaffold at the wound or disease site; the scaffold may carry relevant mature or progenitor cells, and in some cases also soluble growth factors. In cartilage tissue, mature cells are called chondrocytes, and their progenitor cells are mesenchymal stem cells. Tissue regeneration shares many characteristics with natural tissue development, including the importance of appropriate cell differentiation and phenotype maintenance. You will perform a hypothesis-driven investigation of the effects of environmental manipulations on primary chondrocytes and/or mesenchymal stem cells. In particular, you will assess cell viability, genotype, and protein production, but the specific experimental question is up to you.

I gratefully acknowledge Professor Alan Grodzinsky and several members of his lab group (particularly Rachel Miller and Paul Kopesky), for their technical advice and stimulating discussions during the development of this module.

Newly isolated chondrocytes have a round shape.
After growing in 2D culture, chondrocytes lose their round shape.
In 3D culture, chrondrocytes maintain their round shape. Chondrocytes were grown in alginate beads for 1 week.

Module 3 Day 1: Design experiment
Module 3 Day 2: Initiate cell culture
Module 3 Day 3: Testing cell viability
Module 3 Day 4: Preparing cells for analysis
Module 3 Day 5: Initiating transcript and protein assays
Module 3 Day 6: Transcript-level analysis
Module 3 Day 7: Protein-level and wrap-up analysis
Module 3 Day 8: Student presentations

Data Summary

TA notes, mod 3