Talk:20.109(S13):Phylogenetic analysis (Day7)

T/R microbiome

Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].

Team Color	Team Member	Gull ID	Sequence 1 (txt)	Sequence 2 (txt)	Sequence 3 (txt)	Sequence 4 (txt)	Sequence 5 (txt)	Sequence 6 (txt)	Sequence 7 (txt)	Sequence 8 (txt)	Species overview (xlsx)	Alignment (mas)	Tree (pdf)
Red	Nick	702	Media:TR-Red-C1.txt	Media:TR-Red-C2.txt	Media:TR-Red-C3.txt				Media:TR-Red-C7.txt	Media:TR-Red-C8.txt	Media:TR-Red-Species.xlsx	Media:TR-Blue-Red-705.mas	Media:TR-Blue-Red-phylo_tree.pdf
Red
Orange	Daphne, Stas	712		Media:TR-Orange_712-C2.txt			Media:TR-Orange_712-C5.txt		Media:TR-Orange_712-C7.txt	Media:TR-Orange_712-C8.txt	Media:TR-Orange_712.xlsx	Media:TR-712-alignment.mas	Media:TR-712-Alignment.pdf
Orange
Yellow	Ebaa	664	Media: TR-Yellow_664-C1.txt			Media: TR-Yellow_664-C4.txt				Media: TR-Yellow_664-C8.txt	Media: 664_S13-M1D7-template.xlsx
Yellow	Dominique	739		Media: TR-Yellow_739-C2.txt	Media: TR-Yellow_739-C3_2.txt	Media: TR-Yellow_739-C4.txt	Media: TR-Yellow_739-C5.txt	Media: TR-Yellow_739-C6.txt	Media: TR-Yellow_739-C7.txt	Media: TR-Yellow_739-C8.txt	Media: 739_S13-M1D7-template.xlsx
Green	Jesse	405	Media: TR-Green_405-C1.txt	Media: TR-Green_405-C2.txt	Media: TR-Green_405-C3.txt	Media: TR-Green_405-C4.txt		Media: TR-Green_405-C6.txt	Media: TR-Green_405-C7.txt		Media: TR-Green-405-Sepecies Overview.xlsx	Media: TR-405 alignment.mas	Media: TR-405-PhyloTree.pdf
Green
Blue
Blue	Noa	702				Media:TR-Blue-702-C4.txt	Media:TR-Blue-702-C5.txt	Media:TR-Blue-702-C6.txt		Media:TR-Blue-702-C8.txt		Media:TR-Blue-702.xlsx	Media:TR-Blue-Red-phylo_tree.pdf
Pink	Justin & Arturo	709					Media:TR-Pink_709-C5B.txt	Media:TR-Pink_709-C6B.docx				Media:TR-Pink_709B.xlsx
Pink
Purple	Sarah	739	Media:TR-Purple_739-C1.txt	Media:TR-Purple_739-C2.txt	Media:TR-Purple_739-C3.txt	Media:TR-Purple_739-C4.txt			Media:TR-Purple_739-C7.txt	Media:TR-Purple_739-C8.txt	Media:S13-M1D7-template-Sarah Yu.xlsx	Media:module1.mas
Purple	Mitali	664		Media:TR-Purple_664-C2.txt			Media:TR-Purple_664-C5.txt		Media:TR-Purple_664-C7.txt	Media:TR-Purple_664-C8.txt	Media:TR-Purple_664-MK.xlsx	WF NOTE: NOT COMPLETE DO NOT USE Media:TR-664-Preliminary Alignment.mas
Platinum	Emily	732		Media:TR_platinum_732_c2.txt	Media:TR_platinum_732_c3.txt	Media:TR_platinum_732_c4.txt	Media:TR_platinum_732_c5.txt				Media:TR_platinum_732.xlsx	Media:emily and nikki m5 data.mas
Platinum	Katie	405	Media:TR_Platinum_405_c1.txt	-	Media:TR_Platinum_405_c3.txt	-	Media:TR_Platinum_405_c5.txt	Media:TR_Platinum_405_c6.txt	-	Media:TR_Platinum_405_c8.txt	Media:KB_TR_Platinum.xlsx	Katie before combining with Jesse: Media:KatieJesseSession.mas, Katie and Jesse (405) Aligned: Media: TR-405 alignment.mas	Katie and Jesse (405) finished tree - Media: TR-405-PhyloTree.pdf

W/F microbiome

Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].

Team Color	Team Member	Gull ID	Sequence 1 (txt)	Sequence 2 (txt)	Sequence 3 (txt)	Sequence 4 (txt)	Sequence 5 (txt)	Sequence 6 (txt)	Sequence 7 (txt)	Sequence 8 (txt)	Species overview (xlsx)	Alignment (mas)	Tree (pdf)
Red
Red
Orange
Orange
Yellow
Yellow
Green	Kevin Hu	732				Media: WF-Green_732-C4.txt	Media: WF-Green_732-C5.txt		Media: WF-Green_732-C7.txt		Media: WF-Green_732.xlsx
Green	Steve Cho	405	Media: WF-Green_405-C1.txt		Media: WF-Green_405-C3.txt				Media: WF-Green_405-C7.txt		Media: WF-Green_405.xlsx	Media: WF-405 alignment Steve only
Blue	Emmanuel Carrodeguas	712	Media: WF-Blue_712-C1.txt		Media: WF-Blue_712-C3.txt	Media: WF-Blue_712-C4.txt	Media: WF-Blue_712-C5.txt		Media: WF-Blue_712-C7.txt	Media: WF-Blue_712-C8.txt	Media: WF-Blue_712.xlsx	Media: WF-712-Alignment(WF_Blue+TR_Orange).mas	Media: WF-712-Alignment(WF_Blue+TR_Orange).pdf
Blue
Pink
Pink
Purple
Purple
Platinum
Platinum

T/R microsporidia gels

Gel 1

Gel 2, bright

Gel 3

Gel 4

Gel 2, dim -- not sure why image won't show