Van Oudenaarden Lab:R03C1.3
Progress:
Probes designed: (2009 - Jialing Li)
Probes tested: success
Dyes available: TMR, Cy5
>R03C1.3a (cog-1 spliced coding region)
atgagcctaatcatgtccgaaccgccacaactcacgacgcccgacgacaaggacgtcgagaatcggaagcactcctccac
ctacagtatttcaaatttgttgctcgagaagaaggagtcgagcccgtcgggcagttccagtgaggatgactcggcgagca
gcaatgatgatgatcagcggagtccgtcggcaacttcttcattcatttttccgccagcttcatcgtcctcctcgtcggaa
agtgccacgtcaccaacacagattatggctcagcttatggcaaatggtggagcagttgacccgggtcttcaggcatactt
cttccttctacagtcccagttaaacagccaatcaatgatgaaccgagtaacacaggaaaacgtaagccgagctctcacct
ccttcaacctgctcaacaacctgcccggcgcccttccatcactctccccaatggggcgactccagcactcaatgcaactc
tccccgaactccctgaacatgcagaagaagcaaagcagacccacattcaccggccatcagatctatcagctggagcggaa
gttcgagcaaaccaagtacctagccggagcagatcgtgcacagctcgcccaggagcttaacatgagcgagagtcaagtta
aggtgtggttccaaaaccgtcgtacaaaatggcgcaagaaggaagcggccgacaatgcactggtcaaacgtggtgccagc
ggcgacaagtctccttgctcactgagcccatttctcagcgctggaatttag
Name of probe set: cog-1 Probes designed on Mon, 01 Mar 10 12:00:33 -0700 30 probes designed for target of length 771
Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC
tcggacatgattaggctcat, cog-1_1, 1, 1, 45
attctcgacgtccttgtcgt, cog-1_2, 2, 44, 50
aatactgtaggtggaggagt, cog-1_3, 3, 71, 45
ccttcttctcgagcaacaaa, cog-1_4, 4, 96, 45
agtcatcctcactggaactg, cog-1_5, 5, 132, 50
atcatcatcattgctgctcg, cog-1_6, 6, 155, 45
atgaagaagttgccgacgga, cog-1_7, 7, 183, 50
gatgaagctggcggaaaaat, cog-1_8, 8, 205, 45
tgttggtgacgtggcacttt, cog-1_9, 9, 239, 50
ccataagctgagccataatc, cog-1_10, 10, 261, 45
gggtcaactgctccaccatt, cog-1_11, 11, 283, 55
gaagaagtatgcctgaagac, cog-1_12, 12, 305, 45
ctgtttaactgggactgtag, cog-1_13, 13, 328, 45
ctgtgttactcggttcatca, cog-1_14, 14, 356, 45
tgagagctcggcttacgttt, cog-1_15, 15, 378, 50
ttgttgagcaggttgaagga, cog-1_16, 16, 400, 45
attggggagagtgatggaag, cog-1_17, 17, 433, 50
ttgcattgagtgctggagtc, cog-1_18, 18, 458, 50
tctgcatgttcagggagttc, cog-1_19, 19, 486, 50
aatgtgggtctgctttgctt, cog-1_20, 20, 508, 45
tccagctgatagatctgatg, cog-1_21, 21, 535, 45
acttggtttgctcgaacttc, cog-1_22, 22, 558, 45
tgcacgatctgctccggcta, cog-1_23, 23, 581, 60
tcgctcatgttaagctcctg, cog-1_24, 24, 610, 50
gaaccacaccttaacttgac, cog-1_25, 25, 632, 45
gccattttgtacgacggttt, cog-1_26, 26, 654, 45
ttgtcggccgcttccttctt, cog-1_27, 27, 676, 55
tggcaccacgtttgaccagt, cog-1_28, 28, 699, 55
agtgagcaaggagacttgtc, cog-1_29, 29, 724, 50
aattccagcgctgagaaatg, cog-1_30, 30, 749, 45
