User:Tara K. Luckau/Notebook/Team ConGen/2011/11/30

Structure Analysis of AXRJ

Background

• subsample of Sceloporus samples from throughout county
• scored 1st and 2nd pass
• removed samples with marker dropouts
• left with 74 samples: Scoring_20111103_AXRJ.xlsx

Structure - county-wide

• ran 7 runs each of K=1, K=2, K=3, K=4, K=5

• the most likely K is that which has the most positive LnP(D) value
  • paste K and LnP(D) rows into SYSTAT and make line graph:

• Bar Plot for K=1

Structure - within site

RAJ / HOL

• ran 4 runs each of K=1, K=2, K=3

SYR

• ran 4 runs each of K=1, K=2, K=3

Conclusion

• with existing data (74 samples county-wide, 19 samples in RAJ/HOL, 16 samples in SYR), no population genetic structure ... panmictic