User:Ilya/Notes/Software

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Data visualization

  • Many Eyes - a site for sharing and commenting on visualizations by IBM
  • Data360
  • Swivel: YouTube for data - visualize and share your data with others
  • Gapminder
  • Processing is an open source programming language and environment for people who want to program images, animation, and interactions

Application servers

Whitebeam - open source; applications are written as a set of XML pages that contain embedded JavaScript

Project management

  • Planner is the GNOME project management tool
  • Eventum - web-based issue tracking system developed by MySQL

Network

  • EtherApe - a graphical network monitor
  • Wireshark: network protocol analyzer (successor to Ethereal)
  • Tor: an anonymous Internet communication system

Bibliography

Cross platform

  • JabRef is an open source bibliography reference manager

Linux

OS X

Miscellaneous

  • Biotool2Web: Creating Simple Web Interfaces for Bioinformatics Applications
  • Sedna is an open source XML-native database management system developed from scratch in C/C++ and Scheme
  • Aggregate Data utilizes AJAX-based "sliders" so survey takers can choose anywhere along a spectrum of opinion
  • CHM file viewers for non-Windows platforms
  • Babel - convert between various formats (Excel, JSON, N3, RDF/XML, etc)
Personal tools