User:Carl Boettiger/Notebook/Comparative Phylogenetics/2010/09/07

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Meeting with Sam

Discussing elements of likelihood ratio manuscript and review results from release of constraint data. Figure out what to include in one manuscript, what order to present elements in, and what examples are necessary.

  • Phylogenetic Signal introduction. Need for examples? A good example where phylogenetically independent contrasts is misleading, but lambda/K definition of phylogenetic signal is also misleading.
  • Power in phylogenetic tree:
  • Likelihood ratio and model choice: Monte Carlo LR approach, support in the literature http://openwetware.org/wiki/User:Carl_Boettiger/Notebook/Comparative_Phylogenetics/2010/08/25.

Run analyses directly in lab notebook



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