SynBERC:MIT/Calendar/2007-1-17

From OpenWetWare

Jump to: navigation, search

Anyone in the synthetic biology community is welcome to attend.

Wednesday at 1pm

56-614, MIT

Topic of discussion

This week's lunch will be a journal club on papers covering the algorithms and validation testing of RNA folding programs like UNAfold, Sfold and Vienna fold.

Papers:

  1. Do CB, Woods DA, and Batzoglou S. CONTRAfold: RNA secondary structure prediction without physics-based models. Bioinformatics 2006 Jul 15; 22(14) e90-8. doi:10.1093/bioinformatics/btl246 pmid:16873527. PubMed HubMed [do06]
    Results section only, especially Fig. 4 and Tables 3-4

  2. Mathews DH. Revolutions in RNA secondary structure prediction. J Mol Biol 2006 Jun 9; 359(3) 526-32. doi:10.1016/j.jmb.2006.01.067 pmid:16500677. PubMed HubMed [mathews06]
  3. Shao Y, Wu Y, Chan CY, McDonough K, and Ding Y. Rational design and rapid screening of antisense oligonucleotides for prokaryotic gene modulation. Nucleic Acids Res 2006; 34(19) 5660-9. doi:10.1093/nar/gkl715 pmid:17038332. PubMed HubMed [shao06]
All Medline abstracts: PubMed HubMed


For more information see papers recommended by Chase in the Smolke lab.

Retrieved from "http://openwetware.org/wiki/SynBERC:MIT/Calendar/2007-1-17"
Personal tools