User contributions for R. Eric Collins

26 June 2012

• 07:1407:14, 26 June 2012 diff hist +800‎ User:R. Eric Collins/Goldschmidt ‎No edit summary current
• 07:0507:05, 26 June 2012 diff hist −9‎ User:R. Eric Collins/Goldschmidt ‎No edit summary
• 07:0107:01, 26 June 2012 diff hist −1‎ User:R. Eric Collins/Goldschmidt ‎No edit summary
• 07:0107:01, 26 June 2012 diff hist +14‎ User:R. Eric Collins/Goldschmidt ‎No edit summary
• 06:5306:53, 26 June 2012 diff hist +676‎ N User:R. Eric Collins/Goldschmidt ‎ New page: IMG Genomics Demonstration Find out what the Mystery Sequence is and to which metabolic pathway it belongs * Go to the [http://img.jgi.doe.gov JGI] website. The Joint Geno...
• 06:4706:47, 26 June 2012 diff hist +17‎ User:R. Eric Collins ‎No edit summary current
• 06:4606:46, 26 June 2012 diff hist +80‎ User:R. Eric Collins ‎No edit summary
• 06:4406:44, 26 June 2012 diff hist −1,141‎ User:R. Eric Collins ‎ Replacing page with 'Goldschmidt 2012 Marine Biological Lab 2011'
• 06:4406:44, 26 June 2012 diff hist +43‎ User:R. Eric Collins ‎No edit summary
• 06:4206:42, 26 June 2012 diff hist +567‎ N User:R. Eric Collins/Goldschmidt/sequence ‎ New page: >mystery sequence<br> CTTCGACTACGATCTGAAGAAGATGGCCGCGAAGATCTACGGCACCGAGG<br> ACGACAAGCACCCGGGCTGCGCCCGGACTTACCGGTACGCCGACCGGTTC<br> ATCGGCGGGAAAGTCACCCTGGTCAACCCCCCGAAGATGAACGAGCCTTA<br> T... current
• 06:4206:42, 26 June 2012 diff hist −567‎ User:R Eric Collins/Goldschmidt/sequence ‎ Removing all content from page current
• 06:4106:41, 26 June 2012 diff hist +567‎ N User:R Eric Collins/Goldschmidt/sequence ‎ New page: >mystery sequence<br> CTTCGACTACGATCTGAAGAAGATGGCCGCGAAGATCTACGGCACCGAGG<br> ACGACAAGCACCCGGGCTGCGCCCGGACTTACCGGTACGCCGACCGGTTC<br> ATCGGCGGGAAAGTCACCCTGGTCAACCCCCCGAAGATGAACGAGCCTTA<br> T...
• 06:4106:41, 26 June 2012 diff hist +30‎ Goldschmidt/sequence ‎No edit summary current
• 06:4006:40, 26 June 2012 diff hist −8‎ Goldschmidt/sequence ‎No edit summary
• 06:3606:36, 26 June 2012 diff hist −1‎ Goldschmidt/sequence ‎No edit summary
• 06:3606:36, 26 June 2012 diff hist +4‎ Goldschmidt/sequence ‎No edit summary
• 06:3606:36, 26 June 2012 diff hist +15‎ Goldschmidt/sequence ‎No edit summary
• 06:3506:35, 26 June 2012 diff hist +527‎ N Goldschmidt/sequence ‎ New page: >mystery sequence CTTCGACTACGATCTGAAGAAGATGGCCGCGAAGATCTACGGCACCGAGG ACGACAAGCACCCGGGCTGCGCCCGGACTTACCGGTACGCCGACCGGTTC ATCGGCGGGAAAGTCACCCTGGTCAACCCCCCGAAGATGAACGAGCCTTA TGACGCGTTCTTCCTGA...

2 August 2011

• 18:3118:31, 2 August 2011 diff hist +295‎ User:R. Eric Collins/MBL/Popgen ‎No edit summary current
• 16:0816:08, 2 August 2011 diff hist +17‎ User:R. Eric Collins/MBL ‎No edit summary current
• 13:4913:49, 2 August 2011 diff hist +969‎ N User:R. Eric Collins/MBL/Rokas ‎ New page: [http://as.vanderbilt.edu/rokaslab/publications.html Antonis Rokas] == Evolutionary Genomics == * Kahn 2011 increase in sequencing quality over time * CRAP: Cluster Reconstruction ... Ph... current
• 11:0311:03, 2 August 2011 diff hist +26‎ User:R. Eric Collins/MBL ‎No edit summary
• 09:0209:02, 2 August 2011 diff hist +409‎ User:R. Eric Collins/MBL/Edwards ‎No edit summary current
• 08:5008:50, 2 August 2011 diff hist +879‎ User:R. Eric Collins/MBL/Edwards ‎No edit summary
• 07:5507:55, 2 August 2011 diff hist +186‎ User:R. Eric Collins/MBL/PAUP ‎No edit summary current
• 07:4407:44, 2 August 2011 diff hist +581‎ N User:R. Eric Collins/MBL/Edwards ‎ New page: * most common gene tree can not match the species tree (laura k mentioned this 'anomaly zone') * likelihood methods based on coalescence can correct for this given many loci * in this case...
• 07:0707:07, 2 August 2011 diff hist +28‎ User:R. Eric Collins/MBL ‎No edit summary

1 August 2011

• 19:0919:09, 1 August 2011 diff hist +153‎ N User:R. Eric Collins/MBL/STRUCTURE ‎ New page: == MIGRATE-N == * Harmonic Mean is bad --> doesn't converge on right solution even with many chains and long runs * Thermodynamic integration converges current
• 06:3006:30, 1 August 2011 diff hist +28‎ User:R. Eric Collins/MBL ‎No edit summary

30 July 2011

• 11:1311:13, 30 July 2011 diff hist +23‎ User:R. Eric Collins/MBL ‎No edit summary
• 08:2308:23, 30 July 2011 diff hist +343‎ User:R. Eric Collins/MBL/Felsenstein ‎No edit summary current
• 07:2407:24, 30 July 2011 diff hist +1,012‎ N User:R. Eric Collins/MBL/Felsenstein ‎ New page: == Phylogeny & Morphometrics == * genetic covariance * selective covariance ** the same environmental conditions select changes in two or more traits -- even though they may have no genet...
• 06:1606:16, 30 July 2011 diff hist +30‎ User:R. Eric Collins/MBL ‎No edit summary
• 06:1506:15, 30 July 2011 diff hist +261‎ User:R. Eric Collins/MBL/Bayes ‎No edit summary current

29 July 2011

• 14:0014:00, 29 July 2011 diff hist +91‎ User:R. Eric Collins/MBL/Popgen ‎No edit summary
• 13:4513:45, 29 July 2011 diff hist +835‎ User:R. Eric Collins/MBL/Popgen ‎No edit summary
• 11:1311:13, 29 July 2011 diff hist +496‎ User:R. Eric Collins/MBL/Popgen ‎No edit summary
• 08:2608:26, 29 July 2011 diff hist +1,031‎ User:R. Eric Collins/MBL/Popgen ‎No edit summary
• 07:1507:15, 29 July 2011 diff hist +1,055‎ N User:R. Eric Collins/MBL/Popgen ‎ New page: [http://molevol.mbl.edu/wiki/index.php/Peter_Beerli Peter Beerli] == Population Genetics == * assumption of independence among sequences violated in a populatino * Wright-Fisher ** indiv...
• 06:0806:08, 29 July 2011 diff hist +33‎ User:R. Eric Collins/MBL ‎No edit summary

28 July 2011

• 12:3212:32, 28 July 2011 diff hist +479‎ N User:R. Eric Collins/MBL/Clocks ‎ New page: [http://molevol.mbl.edu/wiki/index.php/Msuchard Marc Suchard] == Molecular Clocks == P(t1,t2)* g(t1) P(t1,t2) is well-formed Yule process g(t1) is a prior distribution of divegence time f... current
• 11:0811:08, 28 July 2011 diff hist +30‎ User:R. Eric Collins/MBL ‎No edit summary
• 08:5308:53, 28 July 2011 diff hist +476‎ N User:R. Eric Collins/MBL/Bayes ‎ New page: [http://molevol.mbl.edu/wiki/index.php/Paul_Lewis Paul Lewis] == Bayesian Phylogenetics == * probabilities are applied to intervals, not points ** curve is probability density, not proba...
• 06:1206:12, 28 July 2011 diff hist +35‎ User:R. Eric Collins/MBL ‎No edit summary

27 July 2011

• 18:3618:36, 27 July 2011 diff hist +623‎ User:R. Eric Collins/MBL/PAML ‎No edit summary current
• 17:5317:53, 27 July 2011 diff hist −5‎ User:R. Eric Collins/MBL/PAML ‎No edit summary
• 17:5217:52, 27 July 2011 diff hist +20‎ User:R. Eric Collins/MBL/PAML ‎No edit summary
• 17:5017:50, 27 July 2011 diff hist +910‎ User:R. Eric Collins/MBL/PAML ‎No edit summary
• 16:0816:08, 27 July 2011 diff hist +57‎ N User:R. Eric Collins/MBL/PAML ‎ New page: [http://myweb.dal.ca/js551958/PAML_lab/lab.html PAML Lab]
• 16:0716:07, 27 July 2011 diff hist +20‎ User:R. Eric Collins/MBL ‎No edit summary