Reviews:Directed evolution/Library construction/bibliography

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Introduction

This is the bibliography page for the Openwetware Review Reviews:Directed evolution/Library construction. This review uses the Biblio extension as described here. If you wish to add a reference to the review please place it at the bottom of the list and give it the next available reference number. If possible link the paper via the PubMed ID as this keeps the formatting consistent.

References

  1. Farinas ET, Bulter T, and Arnold FH. . pmid:11849936. PubMed HubMed [1]
  2. Reetz MT, Rentzsch M, Pletsch A, Maywald M, Towards the Directed Evolution of Hybrid Catalysts, Chimia 2002, 56, 721-723

    [2]

  3. Taylor SV, Kast P, and Hilvert D. . pmid:11592132. PubMed HubMed [3]
  4. Waldo GS. . pmid:12547424. PubMed HubMed [4]
  5. Tao H and Cornish VW. . pmid:12470742. PubMed HubMed [5]
  6. Lin H and Cornish VW. . pmid:12458502. PubMed HubMed [6]
  7. Frances H. Arnold, Frances Hamilton Arnold (Editor), George Georgiou (Editor). Directed Enzyme Evolution: Screening and Selection Methods. Humana Press. isbn:158829286X. [7]
  8. Frances Hamilton Arnold, George Georgiou. Directed Evolution Library Creation: Methods and Protocols. Humana Press. isbn:1588292851. [8]
  9. Stemmer WP. . pmid:7938023. PubMed HubMed [9]
  10. Stemmer WP. . pmid:8047147. PubMed HubMed [10]
  11. Zhao H, Giver L, Shao Z, Affholter JA, and Arnold FH. . pmid:9528005. PubMed HubMed [11]
  12. Ostermeier M, Shim JH, and Benkovic SJ. . pmid:10585719. PubMed HubMed [12]
  13. Bornscheuer UT, Altenbuchner J, and Meyer HH. . pmid:10579522. PubMed HubMed [13]
  14. Alexeeva M, Enright A, Dawson MJ, Mahmoudian M, and Turner NJ. . pmid:12207381. PubMed HubMed [14]
  15. Nguyen AW and Daugherty PS. . pmid:12824600. PubMed HubMed [15]
  16. Cadwell RC and Joyce GF. . pmid:7920233. PubMed HubMed [16]
  17. Cirino PC, Mayer KM, and Umeno D. . pmid:12824595. PubMed HubMed [17]
  18. Matsumura I and Ellington AD. . pmid:11124909. PubMed HubMed [18]
  19. Lingen B, Grötzinger J, Kolter D, Kula MR, and Pohl M. . pmid:12200541. PubMed HubMed [19]
  20. Bessler C, Schmitt J, Maurer KH, and Schmid RD. . pmid:14500872. PubMed HubMed [20]
  21. Zaccolo M, Williams DM, Brown DM, and Gherardi E. . pmid:8568899. PubMed HubMed [21]
  22. Zaccolo M and Gherardi E. . pmid:9878443. PubMed HubMed [22]
  23. Patrick WM, Firth AE, and Blackburn JM. . pmid:12874379. PubMed HubMed [23]
  24. Rowe LA, Geddie ML, Alexander OB, and Matsumura I. . pmid:12972256. PubMed HubMed [24]
  25. Miyazaki K and Arnold FH. . pmid:10594172. PubMed HubMed [25]
  26. Murakami H, Hohsaka T, and Sisido M. . pmid:11753366. PubMed HubMed [26]
  27. Murakami H, Hohsaka T, and Sisido M. . pmid:12824602. PubMed HubMed [27]
  28. Hayes F and Hallet B. . pmid:11115754. PubMed HubMed [28]
  29. Pikkemaat MG and Janssen DB. . pmid:11937643. PubMed HubMed [29]
  30. Ward B and Juehne T. . pmid:9461443. PubMed HubMed [30]
  31. Palfrey D, Picardo M, and Hine AV. . pmid:10863100. PubMed HubMed [31]
  32. Virnekäs B, Ge L, Plückthun A, Schneider KC, Wellnhofer G, and Moroney SE. . pmid:7838712. PubMed HubMed [32]
  33. Zehl A, Starke A, Cech D, Hartsch T, Merkl R, Fritz HJ, Efficient and flexible access to fully protected trinucleotides suitable for DNA synthesis by automated phosphoramidite chemistryI, Chem Comm 1996, 23, 2677-2678

    [33]

  34. Kayushin AL, Korosteleva MD, Miroshnikov AI, Kosch W, Zubov D, and Piel N. . pmid:8871554. PubMed HubMed [34]
  35. Kayushin A, Korosteleva M, and Miroshnikov A. . pmid:11200284. PubMed HubMed [35]
  36. Gaytán P, Yáñez J, Sánchez F, and Soberón X. . pmid:11160911. PubMed HubMed [36]
  37. Gaytán P, Yañez J, Sánchez F, Mackie H, and Soberón X. . pmid:9751646. PubMed HubMed [37]
  38. Lahr SJ, Broadwater A, Carter CW Jr, Collier ML, Hensley L, Waldner JC, Pielak GJ, and Edgell MH. . pmid:10611303. PubMed HubMed [38]
  39. Glaser SM, Yelton DE, and Huse WD. . pmid:1460281. PubMed HubMed [39]
  40. Liebeton K, Zonta A, Schimossek K, Nardini M, Lang D, Dijkstra BW, Reetz MT, and Jaeger KE. . pmid:10980451. PubMed HubMed [40]
  41. Sakamoto T, Joern JM, Arisawa A, and Arnold FH. . pmid:11525981. PubMed HubMed [41]
  42. Horsman GP, Liu AM, Henke E, Bornscheuer UT, and Kazlauskas RJ. . pmid:12740839. PubMed HubMed [42]
  43. Leemhuis H, Rozeboom HJ, Wilbrink M, Euverink GJ, Dijkstra BW, and Dijkhuizen L. . pmid:12809508. PubMed HubMed [43]
  44. Wada M, Hsu CC, Franke D, Mitchell M, Heine A, Wilson I, and Wong CH. . pmid:12670660. PubMed HubMed [44]
  45. Juillerat A, Gronemeyer T, Keppler A, Gendreizig S, Pick H, Vogel H, and Johnsson K. . pmid:12725859. PubMed HubMed [45]
  46. Sio CF, Riemens AM, van der Laan JM, Verhaert RM, and Quax WJ. . pmid:12230561. PubMed HubMed [46]
  47. Georgescu R, Bandara G, and Sun L. . pmid:12824604. PubMed HubMed [47]
  48. Miyazaki K and Takenouchi M. . pmid:12449380. PubMed HubMed [48]
  49. Miyazaki K. . pmid:12824598. PubMed HubMed [49]
  50. Zha D, Eipper A, and Reetz MT. . pmid:12512074. PubMed HubMed [50]
  51. Ness JE, Kim S, Gottman A, Pak R, Krebber A, Borchert TV, Govindarajan S, Mundorff EC, and Minshull J. . pmid:12426575. PubMed HubMed [51]
  52. Hogrefe HH, Cline J, Youngblood GL, and Allen RM. . pmid:12449398. PubMed HubMed [52]
  53. Hughes MD, Nagel DA, Santos AF, Sutherland AJ, and Hine AV. . pmid:12927534. PubMed HubMed [53]
  54. Joern JM. . pmid:12824605. PubMed HubMed [54]
  55. Aguinaldo AM and Arnold FH. . pmid:12824608. PubMed HubMed [55]
  56. Coco WM, Levinson WE, Crist MJ, Hektor HJ, Darzins A, Pienkos PT, Squires CH, and Monticello DJ. . pmid:11283594. PubMed HubMed [56]
  57. Coco WM. . pmid:12824609. PubMed HubMed [57]
  58. Lutz S, Ostermeier M, and Benkovic SJ. . pmid:11160936. PubMed HubMed [58]
  59. Ostermeier M and Lutz S. . pmid:12824610. PubMed HubMed [59]
  60. Lutz S and Ostermeier M. . pmid:12824611. PubMed HubMed [60]
  61. Dixon DP, McEwen AG, Lapthorn AJ, and Edwards R. . pmid:12692133. PubMed HubMed [61]
  62. Baik SH, Ide T, Yoshida H, Kagami O, and Harayama S. . pmid:12743762. PubMed HubMed [62]
  63. Miyazaki K. . pmid:12490730. PubMed HubMed [63]
  64. Glieder A, Farinas ET, and Arnold FH. . pmid:12368811. PubMed HubMed [64]
  65. Sun L, Petrounia IP, Yagasaki M, Bandara G, and Arnold FH. . pmid:11707617. PubMed HubMed [65]
  66. Moore GL, Maranas CD, Lutz S, and Benkovic SJ. . pmid:11248060. PubMed HubMed [66]
  67. Moore GL and Maranas CD. . pmid:12034828. PubMed HubMed [67]
  68. Joern JM, Meinhold P, and Arnold FH. . pmid:11866523. PubMed HubMed [68]
  69. Kikuchi M, Ohnishi K, and Harayama S. . pmid:10433977. PubMed HubMed [69]
  70. Kikuchi M, Ohnishi K, and Harayama S. . pmid:10675621. PubMed HubMed [70]
  71. Zha W, Zhu T, and Zhao H. . pmid:12824606. PubMed HubMed [71]
  72. Gibbs MD, Nevalainen KM, and Bergquist PL. . pmid:11410361. PubMed HubMed [72]
  73. Lutz S, Fast W, and Benkovic SJ. . pmid:12601143. PubMed HubMed [73]
  74. Lutz S, Ostermeier M, Moore GL, Maranas CD, and Benkovic SJ. . pmid:11562494. PubMed HubMed [74]
  75. Kawarasaki Y, Griswold KE, Stevenson JD, Selzer T, Benkovic SJ, Iverson BL, and Georgiou G. . pmid:14576326. PubMed HubMed [75]
  76. O'Maille PE, Bakhtina M, and Tsai MD. . pmid:12206782. PubMed HubMed [76]
  77. Hiraga K and Arnold FH. . pmid:12823968. PubMed HubMed [77]
  78. Voigt CA, Martinez C, Wang ZG, Mayo SL, and Arnold FH. . pmid:12042875. PubMed HubMed [78]
  79. Meyer MM, Silberg JJ, Voigt CA, Endelman JB, Mayo SL, Wang ZG, and Arnold FH. . pmid:12876318. PubMed HubMed [79]
  80. Moore JC, Jin HM, Kuchner O, and Arnold FH. . pmid:9325094. PubMed HubMed [80]
All Medline abstracts: PubMed HubMed

Up to here is the references for the original review. Below are new ones.

Error prone PCR

  1. Vanhercke T, Ampe C, Tirry L, and Denolf P. . pmid:15766704. PubMed HubMed [81]
  2. Kobayashi A, Kitaoka M, and Hayashi K. . pmid:15707683. PubMed HubMed [82]
  3. Kopsidas G, Carman RK, Stutt EL, Raicevic A, Roberts AS, Siomos MA, Dobric N, Pontes-Braz L, and Coia G. . pmid:17425805. PubMed HubMed [83]
  4. Fujii R, Kitaoka M, and Hayashi K. . pmid:15507684. PubMed HubMed [84]
  5. Fujii R, Kitaoka M, and Hayashi K. . pmid:17406496. PubMed HubMed [85]
  6. Matsumura I and Rowe LA. . pmid:15857786. PubMed HubMed [86]
All Medline abstracts: PubMed HubMed

Directed methods

  1. Gaytán P, Osuna J, and Soberón X. . pmid:12177312. PubMed HubMed [87]
  2. Tyagi R, Lai R, and Duggleby RG. . pmid:15070414. PubMed HubMed [88]
  3. Zheng L, Baumann U, and Reymond JL. . pmid:15304544. PubMed HubMed [89]
  4. Seyfang A and Jin JH. . pmid:14690693. PubMed HubMed [90]
  5. Liu L and Lomonossoff G. . pmid:16857273. PubMed HubMed [91]
  6. Ko JK and Ma J. . pmid:15659713. PubMed HubMed [92]
  7. Wu W, Jia Z, Liu P, Xie Z, and Wei Q. . pmid:16030347. PubMed HubMed [93]
All Medline abstracts: PubMed HubMed

Insertion and deletion

  1. Shortle D and Sondek J. . pmid:7579648. PubMed HubMed [94]
  2. Osuna J, Yáñez J, Soberón X, and Gaytán P. . pmid:15459282. PubMed HubMed [95]
  3. Jones DD. . pmid:15897323. PubMed HubMed [96]
  4. Simm AM, Baldwin AJ, Busse K, and Jones DD. . pmid:17662719. PubMed HubMed [97]
  5. Fujii R, Kitaoka M, and Hayashi K. . pmid:16493137. PubMed HubMed [98]
All Medline abstracts: PubMed HubMed

Gaytan group substoichiometric Fmoc protection for codon deletion

  1. Osuna J, Yáñez J, Soberón X, and Gaytán P. . pmid:15459282. PubMed HubMed [99]

Tawfik insertion of oligonucleotides via shuffling

  1. Herman A and Tawfik DS. . pmid:17483523. PubMed HubMed [100]

Recombination methods

  1. Müller KM, Stebel SC, Knall S, Zipf G, Bernauer HS, and Arndt KM. . pmid:16061932. PubMed HubMed [101]
  2. Eggert T, Funke SA, Rao NM, Acharya P, Krumm H, Reetz MT, and Jaeger KE. . pmid:15880674. PubMed HubMed [102]
  3. Bittker JA, Le BV, and Liu DR. . pmid:12219078. PubMed HubMed [103]
  4. Zhao H and Zha W. . pmid:17487170. PubMed HubMed [104]
All Medline abstracts: PubMed HubMed

Computational tools

  1. Patrick WM, Firth AE, and Blackburn JM. . pmid:12874379. PubMed HubMed [105]
  2. Firth AE and Patrick WM. . pmid:15932904. PubMed HubMed [106]
  3. Volles MJ and Lansbury PT Jr. . pmid:15990391. PubMed HubMed [107]
  4. Patrick WM and Firth AE. . pmid:16095966. PubMed HubMed [108]
  5. pmid= </blockquote>

    [109]

All Medline abstracts: PubMed HubMed
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