IGEM:MIT/2005/Ray's Tools

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  • Base-Pair Finder - stores a sequence starting from x to y in a file
  • Count - counts total number of amino acids/bp and tells what amino acid is present at a location. Eg you can find aa 251 with this
  • Optimal Codon Usage Writer - given an amino acid sequence, it will reverse-translate to a DNA sequence with optimum codon usage for E. coli. Good for resolving issues with EcoR1 sites etc. (You should take protein sequence off GenBank)
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