IGEM:IMPERIAL/Methodology/Part documentation template/Modelling

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Super Parts links to higher level parts if applicable
Actual Part Logo of the Part
Sub Parts link to included part if applicable link to included part if applicable


Model assumptions and relevance

  • bullet point style

Model description

  • define your model using a mathematical description
  • insert a graphical representation if possible (e.g. CellDesigner display)
  • link to SBML file or matlab.

Model variables and parameters

(list all the variables and parameters of the model in a table, specifying if their values are known, unknown, to be measured.)

Variables
Name Description Initial Value Confidence Reference
Variable 1 bla bla bla XXX known/unknown/to be measured links
Variable 2 bla bla bla XXX known/unknown/to be measured links
Variable 3 bla bla bla XXX known/unknown/to be measured links
Parameters
Name Description Value Confidence Reference
Parameter 1 bla bla bla XXX known/unknown/to be measured links
Parameter 2 bla bla bla XXX known/unknown/to be measured links
Parameter 3 bla bla bla XXX known/unknown/to be measured links

Dynamical and sensitivity analysis

  • analyze model in order to show how the part could fulfill its specifications
  • insert graph and charts

Characterization

  • Describe how you plan to use the modelling to characterize the part
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