IGEM:IMPERIAL/2008/Prototype/Drylab/Data Analysis/Track Software
ImageJ was used primarily to analyse images. Various plugins were tested, such as SpotTracker and Particle Tracker, but both failed to producing any form of convincing result. Microscopy videos were captured using Volocity software, which also provided a cell tracking function. Thus analysis of synthetic videos was done manually and using 64-Bit Volocity analysis software. The synthetic video shown to the right was used as an input for the tracking of synthetic cells.
Volocity 64-Bit was used to analyse synthetic videos created. The following protocol was followed:
Synthetic cells were tracked using ImageJ via the Manual Tracking Plugin. The following protocol was followed: