DataONE:Notebook/Reuse of repository data/2010/06/28

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Notes for June 28, 2010

  • When reviewing my Search Comparison Spreadsheet, I realized that I was missing some searches. I had intended to have 27 total searches for each possible combination of repository, search method and resource/search tool. Although some searches either came up with no results at all or too many results to be useful, it is important to record that I have done them. I will create another table explaining the search methods as a visual aid for my paper/presentation today.

Goals for today:

  1. Complete missing searches
  2. Add numbers of hits and misses to Search Comparison Spreadsheet
  3. Add individual hits to Shared Fields Spreadsheet
  4. Create visual table of search methodology
  5. Complete outline of paper/presentation
  • Realistically, I will probably not get to the last two until tomorrow.

"Re-searches"

  1. Resource: Scirus Search Terms: TreeBASE S1515 within the entire document, Dates 2008-2010 Articles and Abstracts, Journal Sources Results: 0
  2. Resource: Scirus Search Terms: TreeBASE S2376 within the entire document, Dates 2008-2010 Articles and Abstracts, Journal Sources Results: 0
  3. Resource: Scirus Search Terms: TreeBASE S1977 within the entire document, Dates 2008-2010 Articles and Abstracts, Journal Sources Results: 0
  4. Resource: Scirus Search Terms: "Beck, RMD" AND "BMC Evolutionary Biology" AND 2007 in the complete document, Dates 2008-2010 Articles and Abstracts, Journal Sources Results: 0 (13 "other" web resources)
  5. Resource: Scirus Search Terms: "Yoo, Mi-Jeong" AND "BMC Plant Biology" AND TreeBASE in the complete document, Dates 2008-2010 Articles and Abstracts, Journal Sources Results: 2 (both links to original PubMed Central/BioMed Central articles and not citations)
  6. Resource: Scirus Search term(s): "Yoo MJ" 2006 AND "BMC Plant Biology" in the complete document Dates: 2008-2010, journal articles and abstracts only Results: 19
  7. Resource: Scirus Search Terms: Menkis, A* AND PLOS Genetics AND 2008 in the complete document Dates 2008-2010 Articles and Abstracts, Journal Sources Results: 2 (both links to same article authored by Menkis, but not citing the data sought for)
  8. Resource: Scirus Search Terms: ((obtained OR selected) AND (from Pangaea)) ANDNOT ((deposit* OR submit* OR available) AND (from Pangaea)) in the complete document Dates 2008-2010 Articles and Abstracts, Journal Sources Results: 11
  9. Resource: Scirus Search Terms: "Stein, R." AND "Quaternary Science Review" AND 2004 in the complete document Dates 2008-2010 Articles and Abstracts, Journal Sources Results: 0
  10. Resource: Scirus Search Terms: "Riascos, JM" AND "Marine Ecology-Progress Series" AND 2008 in the complete document Dates 2008-2010 Articles and Abstracts, Journal Sources Results: 0
  11. Resource: Scirus Search Terms: "Riascos, JM" in the complete document Dates 2008-2010 Articles and Abstracts, Journal Sources Results: 0 (2 non-journal web sources)
  12. Resource: Scirus Search Terms: "10.3334/ORNLDAAC/*" in the complete document Dates 2008-2010 Articles and Abstracts, Journal Sources Results: 1
  13. Resource: Scirus Search Terms: "Falge et al 2005" FLUXNET in the complete document Dates 2008-2010 Articles and Abstracts, Journal Sources Results: 1
  14. Resource: ISI Web of Science Search Terms: Cited Author=ORNL DAAC Timespan=2008-2010. Databases=SCI-EXPANDED, SSCI, A&HCI. Results: 13
  15. Resource: Google Scholar Terms: with all of the words "TreeBASE 1515" Return articles published between 2008 - 2010 Search only articles in the following subject areas: Biology, Life Sciences, and Environmental Science; Medicine, Pharmacology, and Veterinary Science; Physics, Astronomy, and Planetary Science; Chemistry and Materials Science; Engineering, Computer Science, and Mathematics Results: 0
  16. Resource: Google Scholar Terms: with all of the words "TreeBASE 2376" Return articles published between 2008 - 2010 Search only articles in the following subject areas: Biology, Life Sciences, and Environmental Science; Medicine, Pharmacology, and Veterinary Science; Physics, Astronomy, and Planetary Science; Chemistry and Materials Science; Engineering, Computer Science, and Mathematics Results: 0
  17. Resource: Google Scholar Terms: with all of the words "TreeBASE 1977" Return articles published between 2008 - 2010 Search only articles in the following subject areas: Biology, Life Sciences, and Environmental Science; Medicine, Pharmacology, and Veterinary Science; Physics, Astronomy, and Planetary Science; Chemistry and Materials Science; Engineering, Computer Science, and Mathematics Results: 1 (data deposited into TreeBASE, but different from Study ID 1977, as it is Legacy ID 1977/Study ID 1992)
  18. Resource: Google Scholar Terms: with all of the words "Yoo et al 2006" BMC Plant Biology Return articles published between 2008 - 2010 Search only articles in the following subject areas: Biology, Life Sciences, and Environmental Science; Medicine, Pharmacology, and Veterinary Science; Physics, Astronomy, and Planetary Science; Chemistry and Materials Science; Engineering, Computer Science, and Mathematics Results: 8
  19. Resource: Google Scholar Terms: "from pangaea" published between two dates: 2008-2010 (month not available) Search only articles in the following subject areas: Biology, Life Sciences, and Environmental Science and Medicine, Pharmacology, and Veterinary Science All articles excluding patents. Results: 23 (most are articles about the landmass Pangaea. any attempt to search for "from pangaea database" pulls no results)
  20. Resource: Google Scholar Terms:Google Scholar Terms ""doi:10.1594/PANGAEA" published between two dates: 2008-2010 (month not available) Search only articles in the following subject areas: Biology, Life Sciences, and Environmental Science and Medicine, Pharmacology, and Veterinary Science All articles excluding patents. Results: 1,190
  21. Resource: Google Scholar Terms ""doi:10.1594/PANGAEA" "Stein et al 2004" published between two dates: 2008-2010 (month not available) Search only articles in the following subject areas: Biology, Life Sciences, and Environmental Science and Medicine, Pharmacology, and Veterinary Science All articles excluding patents. Results: 2 (both by Stein with data deposited into Pangaea)

Observations

  • Valerie Enriquez 17:46, 28 June 2010 (EDT): I'm starting to remember why I had originally not listed every possible search. However, it is important to show my work to prove why certain searches were useful for some repositories and others were not. For example: ORNL DAAC has subdatabases like FLUXNET that make it easier to search general search functions like Google Scholar in conjunction with a data author name. However, Pangaea has project titles, but the subdatabases are only listed as water, sediment, or ice. Or, while searching for a DOI prefix for Pangaea or ORNL DAAC pulled a lot of hits, looking for the keywords "study accession number" (since the prefix "S" was far too general) did not prove to be very useful in the searches.

Search Methodology Table

Search Tool/Repository ISI Web of Science Scirus Google Scholar
TreeBASE 1. Name of repository in cited author or cited work field ex) treebase in "cited author" field

2. * Cannot use study accession number in any Cited Reference Search fields

3. Cited author name found in study page on TreeBASE. ex) "Cited Author=(Beck R*) AND Cited Work=(BMC EVOL BIOL) AND Cited Year=(2007)Timespan=2008-2010. Databases=SCI-EXPANDED." for S2376

1. ((obtained OR selected) AND from TreeBASE) ANDNOT ((deposit* OR submit*)) in the complete document, between 2008-2010, abstracts and articles only, journal sources

2. TreeBASE+Example Study Accession Number ex) TreeBASE S1515 within the entire document, Dates 2008-2010 Articles and Abstracts, Journal Sources

3. Name of data author found on TreeBASE plus name of original publication journal and date published. ex) "Beck, RMD" AND "BMC Evolutionary Biology" AND 2007 within the entire document, Dates 2008-2010 Articles and Abstracts, Journal Sources

1. Name of repository with keywords indicating that the article data was obtained from the repository and excluding keywords that indicate that the data was deposited into the repository. ex) treebase download "study accession" -deposit, -submit Published between two dates: 2008-2010 (month not available) Search only articles in the following subject areas: Biology, Life Sciences, and Environmental Science and Medicine, Pharmacology, and Veterinary Science All articles excluding patents.

2. General search for study accession numbers from repository. ex) "study accession" "from treebase" ANDNOT (deposited, uploaded) in the complete document, between 2008-2010, abstracts and articles only, journal sources

3. Author name and date published with publication title ex) with all of the words "Yoo et al 2006" BMC Plant Biology Return articles published between 2008 - 2010 Search only articles in the following subject areas: Biology, Life Sciences, and Environmental Science; Medicine, Pharmacology, and Veterinary Science; Physics, Astronomy, and Planetary Science; Chemistry and Materials Science; Engineering, Computer Science, and Mathematics

Pangaea 1. Name of repository in cited author or cited work field Cited author(Pangaea) Limits: Timespan=2008-2010 (month field not available in advanced search) OR Cited work(Pangaea) Limits: Timespan=2008-2010 (month field not available in advanced search) 

2. * Cannot use doi in any Cited Reference Search fields

3. "Cited Author=(Stein R) AND Cited Work=(QUATERNARY SCI REV) AND Cited Year=(2004) Timespan=2008-2010. Databases=SCI-EXPANDED, SSCI, A&HCI, CPCI-S, CPCI-SSH."

1. ((obtained OR selected) AND (from Pangaea)) ANDNOT ((deposit* OR submit* OR available) AND (from Pangaea))

2. (exact phrase) doi:10.1594/PANGAEA* (in the complete document) Limits: Only show results published between: 2008 and 2010 (month field not available in advanced search) Only show results that are Abstracts, Articles Journal Sources

3. Name of author found on Pangaea plus name of original publication journal and date published. ex) "Stein, R." AND "Quaternary Science Review" AND 2004 in the complete document Dates 2008-2010 Articles and Abstracts, Journal Sources

1. Name of repository. ex) "from pangaea" published between two dates: 2008-2010 (month not available) Search only articles in the following subject areas: Biology, Life Sciences, and Environmental Science and Medicine, Pharmacology, and Veterinary Science All articles excluding patents.

2. General search for DOIs from repository with wildcard. ex) Google Scholar Terms ""doi:10.1594/PANGAEA" "Stein et al 2004" published between two dates: 2008-2010 (month not available) Search only articles in the following subject areas: Biology, Life Sciences, and Environmental Science and Medicine, Pharmacology, and Veterinary Science All articles excluding patents.

3. Author name and date published with project name from Pangaea. ex) Google Scholar Terms ""doi:10.1594/PANGAEA" "Stein et al 2004" published between two dates: 2008-2010 (month not available) Search only articles in the following subject areas: Biology, Life Sciences, and Environmental Science and Medicine, Pharmacology, and Veterinary Science All articles excluding patents.

ORNL DAAC 1. Name of repository in cited author or cited work field ex) Cited Author=ORNL DAAC Timespan=2008-2010. Databases=SCI-EXPANDED, SSCI, A&HCI.

2. * Cannot use doi in any Cited Reference Search fields

3. Name of data author plus year published ISI Web of Science Search Term(s): Cited Author=(Mulholland, PJ) AND Cited Year=(2006)Timespan=2008-2010. Databases=SCI-EXPANDED, SSCI, A&HCI. 

1. Exact phrase "ORNL DAAC" in the complete document Only show results published between 2008-2010, articles and abstracts only, journal sources

2. Unique ID string with wildcard ex) "10.3334/ORNLDAAC/*" in the complete document Dates 2008-2010 Articles and Abstracts, Journal Sources

3. Name of author, year published and name of project within ORNL DAAC ex) "Falge et al 2005" FLUXNET in the complete document Dates 2008-2010 Articles and Abstracts, Journal Sources

1. Name of repository with keywords indicating that the article data was obtained from the repository and excluding keywords that indicate that the data was deposited into the repository. ex)

2. Unique identifier plus date range ex) doi 10.3334/ORNLDAAC/ 2008-2010 Search only in: Biology, Life Sciences, and Environmental Science; Chemistry and Materials Science; Engineering, Computer Science, and Mathematics; Medicine, Pharmacology, and Veterinary Science; Physics, Astronomy, and Planetary or: FLUXNET "doi 10.3334/ORNLDAAC/811" Date range: 2008-2010 Search only in Biology, Life Sciences, and Environmental Science; Physics, Astronomy, and Planetary

3. Name of project within ORNL DAAC, author name and date published. ex) FLUXNET "Falge et al 2005" Date range: 2008-2010 Search only in Biology, Life Sciences, and Environmental Science; Physics, Astronomy, and Planetary Science



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