2/24/10

GenMAPP Day 2

• Created color sets for the four primary comparisons in my study

1. WT12 vs. WT24
2. WT12 vs. TRAMPwater24
3. WT12 vs. TRAMPtreatTumorFree24
4. WT12 vs. TRAMPtreatTumors24

• The following criterion was set in GenMAPP

    For increased-LogFC>0.25 and P-value <0.05
    For decreased-LogFC<-0.25 and P-value <0.05

• Colors were set-increased Red and decreased Green
• Once the color sets were set I proceeded on to the MAPPFinder program

MAPPFinder

• From GenMAPP I accessed MAPPFinder and followed the protocol from the bioinformatics lab for each of the four color sets that I ran