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Please find the source code repository on github. The revision used at the time of publication is XXXX.
Yeast RNA-Seq analysis
In order to quickly test the minimum disjunction method, we include an example GPR rules file for Yeast.
Human Protein and mRNA expression analysis
The script used for the majority of the analysis and processing of expression is proteomic_file_make.py.
To run this script, the following files will need to be downloaded, possibly uncompressed, and their locations will need to be edited in the INPUT section of proteomic_file_make.py.