Wikiomics:NMR vs. X-ray for structure determination

From OpenWetWare

For now, this page is just a collection of references which are somehow related to the differences of structures obtained by Wikiomics:NMR or Wikiomics:X-ray crystallography, but of course any additional information on the topic is welcome.

References

1. Davis AM, Teague SJ, and Kleywegt GJ. . pmid:12820253. PubMed HubMed [DTK03]
2. Godzik A, Koliński A, and Skolnick J. . pmid:8535247. PubMed HubMed [GKS95]
3. Kundu S, Sorensen DC, and Phillips GN Jr. . pmid:15478120. PubMed HubMed [KSP04]
4. Doreleijers JF, Nederveen AJ, Vranken W, Lin J, Bonvin AM, Kaptein R, Markley JL, and Ulrich EL. . pmid:16041478. PubMed HubMed [DNV+05]
5. Braun W, Vasák M, Robbins AH, Stout CD, Wagner G, Kägi JH, and Wüthrich K. . pmid:1438200. PubMed HubMed [BVR+92]
6. Garbuzynskiy SO, Melnik BS, Lobanov MY, Finkelstein AV, and Galzitskaya OV. . pmid:15856480. PubMed HubMed [GML+05]
7. Doreleijers JF, Raves ML, Rullmann T, and Kaptein R. . pmid:10610141. PubMed HubMed [DRR+99]
8. Sander B. Nabuurs CAEMSGVGWV. Concepts and tools for NMR restraint analysis and validation. Concepts in Magnetic Resonance Part A 2004; 22A(2) 90-105.

   [SBNCASGVGWV04]

9. Nabuurs SB, Nederveen AJ, Vranken W, Doreleijers JF, Bonvin AM, Vuister GW, Vriend G, and Spronk CA. . pmid:15103611. PubMed HubMed [NNV+04]
10. Kundu S, Melton JS, Sorensen DC, and Phillips GN Jr. . pmid:12124259. PubMed HubMed [KMS+02]
11. Maiorov V and Abagyan R. . pmid:9710569. PubMed HubMed [MA98]
12. Hooft RW, Vriend G, Sander C, and Abola EE. . pmid:8692262. PubMed HubMed [HVS+96]
13. Lee MR and Kollman PA. . pmid:11591346. PubMed HubMed [LK01]
14. Etchegoin P. {Glassylike low-frequency dynamics of globular proteins}. pre 1998; 58 845-848.

    [1998PhRvE--58--845E]

15. Suto K, Kawagoe K, Shibata N, Morimoto Y, Higuchi Y, Kitamura M, Nakaya T, and Yasuoka N. . pmid:10713530. PubMed HubMed [SKS+00]
16. Bastolla U, Farwer J, Knapp EW, and Vendruscolo M. . pmid:11391771. PubMed HubMed [BFK+01]
17. Rother K, Preissner R, Goede A, and Frömmel C. . pmid:14594717. PubMed HubMed [RPG+03]
18. Skrynnikov NR, Goto NK, Yang D, Choy WY, Tolman JR, Mueller GA, and Kay LE. . pmid:10653702. PubMed HubMed [SGY+00]
19. Doreleijers JF, Rullmann JA, and Kaptein R. . pmid:9680482. PubMed HubMed [DRK98]
20. Vriend G and Sander C. Quality control of protein models: directional atomic contact analysis. J. Appl. Crystallog. 1993; 6 47-60.

    [vriend93]

21. Nederveen AJ, Doreleijers JF, Vranken W, Miller Z, Spronk CA, Nabuurs SB, Güntert P, Livny M, Markley JL, Nilges M, Ulrich EL, Kaptein R, and Bonvin AM. . pmid:15822098. PubMed HubMed [NDV+05]
22. Fan H and Mark AE. . pmid:12945054. PubMed HubMed [FM03]
23. Lo Conte L, Brenner SE, Hubbard TJ, Chothia C, and Murzin AG. . pmid:11752311. PubMed HubMed [LCB+02]
24. Andreeva A, Howorth D, Brenner SE, Hubbard TJ, Chothia C, and Murzin AG. . pmid:14681400. PubMed HubMed [AHB+04]
25. Murzin AG, Brenner SE, Hubbard T, and Chothia C. . pmid:7723011. PubMed HubMed [MBH+95]
26. Rai N, Nöllmann M, Spotorno B, Tassara G, Byron O, and Rocco M. . pmid:15893663. PubMed HubMed [RNS+05]
27. Hooft RW, Sander C, Scharf M, and Vriend G. . pmid:9021272. PubMed HubMed [HSS+96]
28. Doreleijers JF, Vriend G, Raves ML, and Kaptein R. . pmid:10591100. PubMed HubMed [DVR+99]
29. Spronk CAEM, Nabuurs SB, Krieger E, Vriend G, and Vuister GW. Validation of protein structures derived by NMR spectroscopy. Progress in Nuclear Magnetic Resonance Spectroscopy 2004; 45(3-4) 315-337.

    [spronk2004]

30. Nabuurs SB, Spronk CA, Vuister GW, and Vriend G. . pmid:16462939. PubMed HubMed [nabuurs2006]
31. Philippopoulos M and Lim C. . pmid:10373009. PubMed HubMed [Philippopoulos]