Wikiomics:NMR Toolbox: Difference between revisions

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==Spectra processing==
==Spectra processing==


* NMRpipe [http://spin.niddk.nih.gov/NMRPipe/]
* [http://spin.niddk.nih.gov/NMRPipe/ NMRpipe]
* Talos (part of NMRpipe) [http://spin.niddk.nih.gov/NMRPipe/talos/]
* [http://spin.niddk.nih.gov/NMRPipe/talos/ Talos](part of NMRpipe)  
* Dynamo (part of NMRpipe) [http://spin.niddk.nih.gov/NMRPipe/dynamo/]
* [http://spin.niddk.nih.gov/NMRPipe/dynamo/ Dynamo](part of NMRpipe)


==Spectra diplay/Assignment==
==Spectra diplay/Assignment==


* NMRViewJ [http://www.onemoonscientific.com/nmrview/]
* [http://www.onemoonscientific.com/nmrview/ NMRViewJ]


==Structure calculation==
==Structure calculation==


* xplor (molecular dynamics) [http://xplor.csb.yale.edu/xplor/]
* [http://xplor.csb.yale.edu/xplor/ xplor](molecular dynamics)
* CNS [http://cns.csb.yale.edu/]
* [http://cns.csb.yale.edu/ CNS]
* dyana (distance restrains)
* dyana (distance restrains)


==Quality checking==
==Quality checking==


* procheck [http://www.biochem.ucl.ac.uk/~roman/procheck_nmr/procheck_nmr.html]
* [http://www.biochem.ucl.ac.uk/~roman/procheck_nmr/procheck_nmr.html procheck]
* aqua [http://tang.bmrb.wisc.edu/~jurgen/aqua/]
* [http://tang.bmrb.wisc.edu/~jurgen/aqua/ aqua]


==Model building==
==Model building==
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==Molecule display==
==Molecule display==


* molmol [http://hugin.ethz.ch/wuthrich/software/molmol/]
* [http://hugin.ethz.ch/wuthrich/software/molmol/ molmol]
* grasp [http://wiki.c2b2.columbia.edu/honiglab_public/index.php/Software:GRASP]
* [http://wiki.c2b2.columbia.edu/honiglab_public/index.php/Software:GRASP grasp]
* molscript [http://www.avatar.se/molscript/]
* [http://www.avatar.se/molscript/ molscript]
* povray
* povray
* pymol [http://pymol.sourceforge.net/]
* [http://pymol.sourceforge.net/ pymol]
* rasmol [http://www.umass.edu/microbio/rasmol/]
* [http://www.umass.edu/microbio/rasmol/ rasmol]
* raster3D [http://skuld.bmsc.washington.edu/raster3d/]
* [http://skuld.bmsc.washington.edu/raster3d/ raster3D]
* DeepView (SWISS-PDBViewer)[http://www.expasy.org/spdbv/]
* [http://www.expasy.org/spdbv/ DeepView](SWISS-PDBViewer)


See also: [http://directory.google.com/Top/Science/Chemistry/Software/Structural/Visualization/]
See also: [http://directory.google.com/Top/Science/Chemistry/Software/Structural/Visualization/]
=2B clasified=
* [http://aria.pasteur.fr/documentation/generalities/general-features-of-aria ARIA]
* [http://www.ccpn.ac.uk/ CCPN]  Collaborative Computing Project for NMR
=External web sites with NMR software links=
(bit dated as well)
* http://www.spincore.com/nmrinfo/software_s.html
* http://nmr.ioc.ac.ru/li_links.htm


== Credits ==
== Credits ==

Latest revision as of 13:24, 17 January 2008

 This article is a stub. You can help OpenWetWare by expanding it.

NMR Toolbox

Spectra processing

Spectra diplay/Assignment

Structure calculation

  • xplor(molecular dynamics)
  • CNS
  • dyana (distance restrains)

Quality checking

Model building

  • modeller (template based/threading) [1]

Molecule display

See also: [2]

2B clasified

  • ARIA
  • CCPN Collaborative Computing Project for NMR

External web sites with NMR software links

(bit dated as well)

Credits

Template:Credits

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