Wikiomics:Mutation/SNP detection: Difference between revisions
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* [http://bfgl.anri.barc.usda.gov/ML/snp-phage/ SNP-PHAGE] | * [http://bfgl.anri.barc.usda.gov/ML/snp-phage/ SNP-PHAGE] | ||
* [http://snp.agrsci.dk/maviant MAVIANT] tool for SNP evaluation and annotation. | * [http://snp.agrsci.dk/maviant MAVIANT] tool for SNP evaluation and annotation. | ||
[[Category:Protocol]] | |||
[[Category:In silico]] | |||
[[Category:Sequence analysis]] | |||
Latest revision as of 12:25, 29 July 2008
Mutation/SNP detection
- MutationSurveyor $$$ program. 30 days demo available. MS3 has a limit of MS3 400 traces in a single project. GUI. Used in several diagnostic labs.
- InSNP windows only, ABI base calls? detects substitution and indel SNPs in sequencing traces
- PolyPhred [ref http://nar.oxfordjournals.org/cgi/content/full/25/14/2745] 1997 program, integrated with phred and Consed.
see (unchecked yet): PolyPhred tutorial
