Wikiomics:Mutation/SNP detection

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
m (init)
Current revision (15:25, 29 July 2008) (view source)
m (+Category)
 
Line 20: Line 20:
* [http://bfgl.anri.barc.usda.gov/ML/snp-phage/ SNP-PHAGE]
* [http://bfgl.anri.barc.usda.gov/ML/snp-phage/ SNP-PHAGE]
* [http://snp.agrsci.dk/maviant MAVIANT] tool for SNP evaluation and annotation.
* [http://snp.agrsci.dk/maviant MAVIANT] tool for SNP evaluation and annotation.
 +
 +
 +
 +
[[Category:Protocol]]
 +
[[Category:In silico]]
 +
[[Category:Sequence analysis]]

Current revision

Mutation/SNP detection

  • PolyScan ref New program claimed to be superior to MutationSurveyor/PolyPhred/SNPdetector
  • MutationSurveyor $$$ program. 30 days demo available. MS3 has a limit of MS3 400 traces in a single project. GUI. Used in several diagnostic labs.
  • InSNP windows only, ABI base calls? detects substitution and indel SNPs in sequencing traces

see (unchecked yet): PolyPhred tutorial

SNP

  • novoSNP ref Windows/Linux 2.0.3. GUI & command line on Linux.
Retrieved from "http://openwetware.org/wiki/Wikiomics:Mutation/SNP_detection"
Personal tools