Wikiomics:Multiple sequence alignment - Revision history

Darek Kedra: link to bioinfor tut

Darek Kedra — Thu, 18 Mar 2010 17:39:38 GMT

link to bioinfor tut

←Older revision		Revision as of 17:39, 18 March 2010
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	{{text-needed}}		{{text-needed}}

		+	See also [[Wikiomics:Bioinfo_tutorial#Protein_Alignment]]

	Multiple sequence alignment is widely used in the sequence analysis. It is more reliable, and hosts more information than derived from BLAST multiple pairwise alignment. The MSA allows for identification of common regions between proteins (including motifs), finding conserved residues and analysis of evolutionary relationships between sequences.		Multiple sequence alignment is widely used in the sequence analysis. It is more reliable, and hosts more information than derived from BLAST multiple pairwise alignment. The MSA allows for identification of common regions between proteins (including motifs), finding conserved residues and analysis of evolutionary relationships between sequences.

Torsten Waldminghaus: added tags

Torsten Waldminghaus — Mon, 03 Mar 2008 20:47:15 GMT

added tags

←Older revision		Revision as of 20:47, 3 March 2008
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	#multiseq pmid=16914055		#multiseq pmid=16914055
	</biblio>		</biblio>
		+
		+
		+	[[Category:Protocol]]
		+	[[Category:In silico]]
		+	[[Category:Sequence analysis]]

Bill Flanagan at 05:50, 20 November 2007

Bill Flanagan — Tue, 20 Nov 2007 05:50:16 GMT

←Older revision		Revision as of 05:50, 20 November 2007
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	* PCMA <cite>pcma</cite>		* PCMA <cite>pcma</cite>
	* TBA		* TBA
-	* [[multiseq_alignment_tool\|MultiSeq]] <cite>multiseq</cite>	+	* [[Wikiomics:multiseq_alignment_tool\|MultiSeq]] <cite>multiseq</cite>

	===Analysis of conservation in the multiple sequence alignment===		===Analysis of conservation in the multiple sequence alignment===

Bill Flanagan: 1 revision(s)

Bill Flanagan — Tue, 20 Nov 2007 04:00:33 GMT

1 revision(s)

←Older revision

Revision as of 04:00, 20 November 2007

Cereus: /* Software producing the multiple sequence alignment */

Cereus — Thu, 02 Nov 2006 19:58:32 GMT

Software producing the multiple sequence alignment

New page

{{text-needed}}

Multiple sequence alignment is widely used in the sequence analysis. It is more reliable, and hosts more information than derived from BLAST multiple pairwise alignment. The MSA allows for identification of common regions between proteins (including motifs), finding conserved residues and analysis of evolutionary relationships between sequences.

===Software producing the multiple sequence alignment===
* Clustal <cite>clustalw</cite>
* T-Coffee
* Probcons <cite>probcons</cite>
* Muscle <cite>muscle</cite>
* MAFFT <cite>mafft</cite>
* Kalign <cite>kalign</cite>
* PCMA <cite>pcma</cite>
* TBA
* [[multiseq_alignment_tool|MultiSeq]] <cite>multiseq</cite>

===Analysis of conservation in the multiple sequence alignment===
* AL2CO

===Databases of multiple sequence alignments===
* PFAM
* InterPro
* CDD

==References==

<biblio>
#clustalw pmid=7984417
#al2co pmid=11524371
#muscle pmid=15034147
#probcons pmid=15687296
#mafft pmid=15661851
#kalign pmid=16343337
#pcma pmid=12584134
#multiseq pmid=16914055
</biblio>