Wikiomics:List of articles: Difference between revisions
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* What is [[bioinformatics]]? | * What is [[bioinformatics]]? | ||
* [[Bioinfo tutorial|Bioinformatics tutorial]] | * [[Wikiomics:Bioinfo tutorial|Bioinformatics tutorial]] | ||
* External [[collections of bioinformatics links]] which are well-maintained and recognized as useful by biologists | * External [[collections of bioinformatics links]] which are well-maintained and recognized as useful by biologists | ||
* [[Other wikis and forums]] in the field of bioinformatics | * [[Wikiomics:Other wikis and forums]] in the field of bioinformatics | ||
* [[Bioinformatics journals]]: what they provide and where to submit (new) | * [[Wikiomics:Bioinformatics journals]]: what they provide and where to submit (new) | ||
* [[Cool links]]: links to bioinformatics-related projects, documents or communities of special interest. | * [[Wikiomics:Cool links]]: links to bioinformatics-related projects, documents or communities of special interest. | ||
== Sequence analysis == | == Sequence analysis == | ||
* [[BLAST | Practical guide to BLAST]] and its different flavors | * [[Wikiomics:BLAST | Practical guide to BLAST]] and its different flavors | ||
* [[Percentage identity | How to compute the percentage identity | * [[Wikiomics:Percentage identity | How to compute the percentage identity | ||
between a pair of sequences?]] | between a pair of sequences?]] | ||
* [[Multiple sequence alignment | How to deal with the multiple sequence alignment?]] | * [[Wikiomics:Multiple sequence alignment | How to deal with the multiple sequence alignment?]] | ||
== Proteins == | == Proteins == | ||
* Techniques and resources for automated [[protein function prediction]] | * Techniques and resources for automated [[protein function prediction]] | ||
* [[BLAST | Practical guide to BLAST]] and its different flavors | * [[Wikiomics:BLAST | Practical guide to BLAST]] and its different flavors | ||
* In-silico simulation of [[Site Directed Mutagenesis]] procedure or how to find best targets | * In-silico simulation of [[Site Directed Mutagenesis]] procedure or how to find best targets | ||
Revision as of 22:48, 19 November 2007
This is the list of the most important articles of this wiki. If you create an article in this wiki, just insert a link on this page. Not all articles need to be listed here, just do what feels right. There is also a space for wanted articles. Also, see Special:Categories for all the categories which are used to tag articles, and Special:Allpages for all the pages.
General
- What is bioinformatics?
- Bioinformatics tutorial
- External collections of bioinformatics links which are well-maintained and recognized as useful by biologists
- Wikiomics:Other wikis and forums in the field of bioinformatics
- Wikiomics:Bioinformatics journals: what they provide and where to submit (new)
- Wikiomics:Cool links: links to bioinformatics-related projects, documents or communities of special interest.
Sequence analysis
- Practical guide to BLAST and its different flavors
- How to compute the percentage identity between a pair of sequences?
- How to deal with the multiple sequence alignment?
Proteins
- Techniques and resources for automated protein function prediction
- Practical guide to BLAST and its different flavors
- In-silico simulation of Site Directed Mutagenesis procedure or how to find best targets
Protein structure
- Searching for 3D functional sites in a protein structure without any requirement of sequence or fold similarity
- RMSD howto
- PDB File Howto
- Protein volume: definitions and tools
RNA
- RNA secondary structure prediction
- Single sequence folding
- Structures from alignments
- Simultaneous alignment and structure prediction
- Aligning RNA structures
- RNA homology search
- Probabilistic methods (SCFG/CM and HMMs)
- Descriptor-based methods
- Family specific methods (eg. tRNAs, miRNAs)
- RNA gene-finding
- RNA databases
- Sequence databases
- Alignment and consensus secondary structure databases
- Tertiary structure databases
- RNA phylogenetics
- Alignment visualization and plotting RNA structures
- RNA Tertiary structure prediction
Phylogenetics
Microarrays
- Exon_microarrays
- Quality Control
- Background subtraction
- Microarray normalization
- Statistical Modeling
- Dimension reduction
- Annotation
- Inferences
SNP and CGH Data
Chromatin Immunoprecipitation
Proteomics
Genome Annotation
Viruses
Linux
- Specialized Linux distributions for bioinformatics
Bioinformatics and databases
Large-scale and intensive computing
- Grid computing in practice
Communities and labs
- Automated function prediction of genes and proteins
- Godzik Lab
- ScientistSolutions Bioinformatics Forum
External Medical Reference Links
- eMedicine Physician contributed medical articles and CME
- KMLE Medical Dictionary Medical dictionary and medical related links
- NLM (US National Library of Medicine, contains resources for patients and health care professionals)
- WebMD General comprehensive online health information
Wikiforum: open questions and wanted articles
Ask questions and build solutions collaboratively at our wikiforum. It is like a forum where threads would eventually evolve into clean tutorials: anyone can ask questions about bioinformatics. Just create a page where your specific question is asked. Once satisfying answers are given, the page can be moved to the list of articles above.
Tip: you can get an email notification when a question is being answered, but you have to register:
- create an account or log in,
- confirm your email address in your preferences,
- watch the pages that interest you.
- (no questions so far)
