Wikiomics:Glycomics: Difference between revisions
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Review: | |||
1. “Bioinformatics for glycomics: Status, methods, requirements and perspectives -- von der Lieth et al. 5 (2): 164 -- Briefings in Bioinformatics,” http://bib.oxfordjournals.org/cgi/content/abstract/5/2/164. | |||
=Protein Glycosylation sites prediction= | =Protein Glycosylation sites prediction= | ||
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* [http://www.cbs.dtu.dk/services/NetOGlyc/ NetOGlyc] "neural network predictions of mucin type GalNAc O-glycosylation sites in mammalian proteins." | * [http://www.cbs.dtu.dk/services/NetOGlyc/ NetOGlyc] "neural network predictions of mucin type GalNAc O-glycosylation sites in mammalian proteins." | ||
* [http://www.cbs.dtu.dk/services/YinOYang/ YinOYang] "The YinOYang WWW server produces neural network predictions for O-ß-GlcNAc attachment sites in eukaryotic protein sequences." | |||
* [http://comp.chem.nottingham.ac.uk/glyco/ GPP] random forest predictor from Nottingham. "predicts glycosylation sites with an accuracy of 90.8% for Ser sites, 92.0% for Thr sites and 92.8% for Asn sites." | |||
=Glycosylation databases= | =Glycosylation databases= | ||
Latest revision as of 03:54, 2 December 2008
Review:
1. “Bioinformatics for glycomics: Status, methods, requirements and perspectives -- von der Lieth et al. 5 (2): 164 -- Briefings in Bioinformatics,” http://bib.oxfordjournals.org/cgi/content/abstract/5/2/164.
Protein Glycosylation sites prediction
- NetNglyc "predicts N-Glycosylation sites in human proteins using artificial neural networks that examine the sequence context of Asn-Xaa-Ser/Thr sequons".
- NetOGlyc "neural network predictions of mucin type GalNAc O-glycosylation sites in mammalian proteins."
- YinOYang "The YinOYang WWW server produces neural network predictions for O-ß-GlcNAc attachment sites in eukaryotic protein sequences."
- GPP random forest predictor from Nottingham. "predicts glycosylation sites with an accuracy of 90.8% for Ser sites, 92.0% for Thr sites and 92.8% for Asn sites."
Glycosylation databases
