Wikiomics:Docking toolbox - Revision history

Christopher C Vanlang at 01:39, 30 December 2011

Christopher C Vanlang — Fri, 30 Dec 2011 01:39:36 GMT

←Older revision		Revision as of 01:39, 30 December 2011
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	[[Category:In silico]]		[[Category:In silico]]
	[[Category:Modelling]]		[[Category:Modelling]]
-	[[Category:Structure ~~analysis~~]]	+	[[Category:Structure]]

Christopher C Vanlang — Fri, 30 Dec 2011 01:37:56 GMT

←Older revision		Revision as of 01:37, 30 December 2011
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	[[Category:Protocol]]		[[Category:Protocol]]
	[[Category:In silico]]		[[Category:In silico]]
-	~~[[Category:Data analysis]]~~
	[[Category:Modelling]]		[[Category:Modelling]]
		+	[[Category:Structure analysis]]

Kirtan Dave — Thu, 21 Oct 2010 16:28:56 GMT

Commercial

←Older revision		Revision as of 16:28, 21 October 2010
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	==Commercial==		==Commercial==

-	* [http://www.biosolveit.de/FlexX/ FlexX ] (both stand alone and Sybyl/MOE module) Sybyl docking tutorial: [http://www.cmbi.ru.nl/edu/bioinf4/thu-Prac/screening/screenings.shtml] ~~$$$~~	+	* [http://www.biosolveit.de/FlexX/ FlexX ] (both stand alone and Sybyl/MOE module) Sybyl docking tutorial: [http://www.cmbi.ru.nl/edu/bioinf4/thu-Prac/screening/screenings.shtml]
-	* [http://www.ccdc.cam.ac.uk/products/life_sciences/gold/ GOLD ] ~~$$$~~	+	* [http://www.ccdc.cam.ac.uk/products/life_sciences/gold/ GOLD ]
-	* [http://www.molsoft.com/docking.html ICM] (docking)~~$$$~~	+	* [http://www.molsoft.com/docking.html ICM] (docking)
-	* [http://www.schrodinger.com/ProductDescription.php?mID=6&sID=6 GLIDE] ~~$$$~~	+	* [http://www.schrodinger.com/ProductDescription.php?mID=6&sID=6 GLIDE]
	* [http://accelrys.com/products/materials-studio/ Materials Studio]		* [http://accelrys.com/products/materials-studio/ Materials Studio]
-	*[http://www.arguslab.com/ ArgusLab]~~$$$~~	+	*[http://www.arguslab.com/ ArgusLab]

	==Free/Semi Free??==		==Free/Semi Free??==

Kirtan Dave — Tue, 19 Oct 2010 20:52:14 GMT

Ligands databases

←Older revision		Revision as of 20:52, 19 October 2010
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	* [http://ligand.info/ Ligand.Info] Small-Molecule Meta-Database		* [http://ligand.info/ Ligand.Info] Small-Molecule Meta-Database
	* [http://zinc.docking.org/ ZINC] a free database of commercially-available compounds for virtual screening		* [http://zinc.docking.org/ ZINC] a free database of commercially-available compounds for virtual screening
-	* [http://lpdb.chem.lsa.umich.edu/ ~~Ligand-Protein Database~~.] Curated target and ligand structures	+	* [http://lpdb.chem.lsa.umich.edu/ LPDB.] Curated target and ligand structures
-	* [http://swissdock.vital-it.ch/s3db/index.php ~~Ligand-Protein Database.~~]Database of manually curated target and ligand structures	+	* [http://swissdock.vital-it.ch/s3db/index.php S3DB]Database of manually curated target and ligand structures

	==Reviews/Info==		==Reviews/Info==

Kirtan Dave — Tue, 19 Oct 2010 20:50:15 GMT

Ligands databases

←Older revision		Revision as of 20:50, 19 October 2010
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	* [http://zinc.docking.org/ ZINC] a free database of commercially-available compounds for virtual screening		* [http://zinc.docking.org/ ZINC] a free database of commercially-available compounds for virtual screening
	* [http://lpdb.chem.lsa.umich.edu/ Ligand-Protein Database.] Curated target and ligand structures		* [http://lpdb.chem.lsa.umich.edu/ Ligand-Protein Database.] Curated target and ligand structures
		+	* [http://swissdock.vital-it.ch/s3db/index.php Ligand-Protein Database.]Database of manually curated target and ligand structures

	==Reviews/Info==		==Reviews/Info==

Kirtan Dave — Tue, 19 Oct 2010 20:48:22 GMT

Free/Semi Free??

←Older revision		Revision as of 20:48, 19 October 2010
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	* [http://gemdock.life.nctu.edu.tw/dock/ GEMDOCK]		* [http://gemdock.life.nctu.edu.tw/dock/ GEMDOCK]
		+	* [http://swissdock.vital-it.ch/ SwissDock]

	=Ligands databases=		=Ligands databases=

Kirtan Dave — Tue, 19 Oct 2010 20:46:15 GMT

Ligands databases

←Older revision		Revision as of 20:46, 19 October 2010
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	* [http://ligand.info/ Ligand.Info] Small-Molecule Meta-Database		* [http://ligand.info/ Ligand.Info] Small-Molecule Meta-Database
	* [http://zinc.docking.org/ ZINC] a free database of commercially-available compounds for virtual screening		* [http://zinc.docking.org/ ZINC] a free database of commercially-available compounds for virtual screening
		+	* [http://lpdb.chem.lsa.umich.edu/ Ligand-Protein Database.] Curated target and ligand structures

	==Reviews/Info==		==Reviews/Info==

Kirtan Dave — Mon, 18 Jan 2010 12:35:12 GMT

Commercial

←Older revision		Revision as of 12:35, 18 January 2010
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	* [http://www.molsoft.com/docking.html ICM] (docking)$$$		* [http://www.molsoft.com/docking.html ICM] (docking)$$$
	* [http://www.schrodinger.com/ProductDescription.php?mID=6&sID=6 GLIDE] $$$		* [http://www.schrodinger.com/ProductDescription.php?mID=6&sID=6 GLIDE] $$$
-	* [http://www.arguslab.com/ArgusLab]	+	* [http://accelrys.com/products/materials-studio/ Materials Studio]
		+	*[http://www.arguslab.com/ ArgusLab]$$$

	==Free/Semi Free??==		==Free/Semi Free??==

Kirtan Dave — Mon, 18 Jan 2010 12:28:05 GMT

Commercial

←Older revision		Revision as of 12:28, 18 January 2010
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	* [http://www.molsoft.com/docking.html ICM] (docking)$$$		* [http://www.molsoft.com/docking.html ICM] (docking)$$$
	* [http://www.schrodinger.com/ProductDescription.php?mID=6&sID=6 GLIDE] $$$		* [http://www.schrodinger.com/ProductDescription.php?mID=6&sID=6 GLIDE] $$$
		+	* [http://www.arguslab.com/ArgusLab]

	==Free/Semi Free??==		==Free/Semi Free??==

Kirtan Dave — Mon, 18 Jan 2010 12:21:55 GMT

Protein-protein docking

←Older revision		Revision as of 12:21, 18 January 2010
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	** ZRANK		** ZRANK
	** RDOCK		** RDOCK
		+	*[http://www.loria.fr/~ritchied/hex/ HEX] Hex is an interactive protein docking and molecular superposition program.It takes protein and DNA PDB file format and also read small-molecule SDF files.
		+	** [http://www.loria.fr/~ritchied/hex/licence.html HEX]