Wikiomics:BLAST tutorial (exercises): Difference between revisions

Latest revision as of 08:46, 8 April 2008

blastp with shuffled sequence: note that all hits must be wrong!

>Shuffled_protein
MNALFNGRYVRQNLRFAGFARVDRERPPLTWFQVSAIPLFARGFAGAIDSSRISRSGEAF
VGCVCLAQPCFVGAADGEADLRAGVGSVTVAVNGSLLLFALG

what is this nucleotide sequence?

>nucleotide_1
ATATAGTTTTTAATTAGGAGGATTTTATCAATGAAAATATCAATACTATACAGTAGCAAGACAGGAAAAA
CCGAAAGAGTTGCCAAGTTAATTGAAGAAGGTGTGAAGAGGTCTGGAAATATTGAAGTAAAAACTATGAA
TTTAGATGCAGTTGATAAAAAGTTCTTACAAGAATCAGAAGGAATTATTTTTGGAACACCAACTTATTAT

same sequence mutated:

>nucleotide_2
ATATAGTATTTAATTAGGAGGATTTCATCAATGACACTCTCAATACTATACAGTAGCAAG
ACAGGGAAAACAGAAAGAGTTGCCAAGGTAATTGAGGAAGGTGTGAAGAGGTCTCAAAAT
AATGAAGTAAGAACTGTGAATCTAGATGCAGTTCATAATAAGTTCTTCGAAGAATCAGGA
GGCATTCTTTTTGGAACACCAACTTATGAT

what is it? Any remote similarity?

>protein_1
HIGSDTDGDDDSETEGEWNLKEGGSIDAELSHSRKAKKVESLLRKLHTKDILPEEVSS
GSHLHTRSPMVLFLSLAVPTDKVVMFYKALFTEAELKAPLESLKRFQNNGDARTGKSA
IFMLGGGHFAGAVISHEPVKVKGQLLNEELPYLQKIQSINVLESKTFHRYTTRRKQGG

play with your favorite gene/protein

Wikiomics:BLAST tutorial (exercises): Difference between revisions

Latest revision as of 08:46, 8 April 2008

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Revision as of 08:37, 8 April 2008 (view source) Darek Kedra (talk \| contribs) m (spel) ← Older edit	Latest revision as of 08:46, 8 April 2008 (view source) Austin J. Che (talk \| contribs) m (Wikiomics:BLAST tutorial (excercises) moved to Wikiomics:BLAST tutorial (exercises): title spelling)
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