Van Oudenaarden Lab:F38A6.3: Difference between revisions
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>F38A6.3c (hif-1 spliced coding region) | |||
atgagcagggactctgaatacctagatagaaaatacacggaaagcccaatgggtgcattcacaactcgtcacacttgcga | |||
catgcgcatcactttcgtttcggataagttcaattacatcttgaaaagtgagctgaagactctcatgggcaccagtttct | |||
acgaattggtacatccagccgatatgatgatagtatcaaaatccatgaaggaactttttgccaaaggacacatccgtacc | |||
ccgtattaccggttgattgctgcaaatgacacacttgcctggattcaaacagaagctactacaatcacacatacgacgaa | |||
aggacaaaaaggacaatatgtcatttgtgttcattacgttctcggaatccaaggagctgaagagtcattggtagtttgca | |||
ctgattcaatgccagctggaatgcaagtagatatcaagaaggaagtggatgatacaagagactatattggaagacaacct | |||
gaaattgtggaatgcgtcgattttactccattgatcgagccagaagatccatttgatacggttattgagccagtcgttgg | |||
tggagaagaacctgttaagcaggctgatatgggagcacgtaagaacagctacgatgacgttttgcaatggctttttcgcg | |||
accagccaagctctccgccgccggcacgctaccggtcagcggaccgcttcaggacaaccgaaccgtcgaatttcggttcc | |||
gctctggcctcgccggacttcatggattcgtcatctcgtacctcccgaccgaagacatcatacggacgaagagcacaaag | |||
tcagggaagtcgaacaactggatcgtcttccacgtcagcatcggccacattgccacacagtgccaactactcgccacttg | |||
cagagggcatctcacaatgtggacttaacagtcccccgagtatcaaatctggacaagtcgtgtacggagacgctcgatct | |||
atgggacgtagctgcgatccgtccgattcgtcacgacgcttttccgccctttcaccatcagatactctcaatgtgtcgtc | |||
cactagaggcatcaacccagtcatcggaagcaatgatgtgttctccactatgccttttgccgattctatcgccattgccg | |||
aaaggatcgattcgtcgccaacattaacctctggcgaaccaatactttgtgacgatcttcaatgggaagagcctgattta | |||
tcgtgcttggcaccattcgttgacacttatgatatgatgcaaatggacgaggggttaccaccagagcttcaagctcttta | |||
cgacttgcctgactttacacctgcggtacctcaagccccagctgctcggcctgtgcacattgacagaagcccaccagcga | |||
agcgaatgcaccaatcaggtccctcagatttagattttatgtacactcaacattatcaaccattccaacaagacgagaca | |||
tattggcaaggacagcaacagcaaaatgaacaacagcctagttcttattccccatttccaatgctctcttga | |||
---- | |||
Name of probe set: hif-1 | |||
Probes designed on Mon, 01 Mar 10 14:18:59 -0700 | |||
48 probes designed for target of length 1512 | |||
Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC | |||
tattcagagtccctgctcat, hif-1_1, 1, 1, 45 | |||
gggctttccgtgtattttct, hif-1_2, 2, 28, 45 | |||
tgtgacgagttgtgaatgca, hif-1_3, 3, 54, 45 | |||
aacgaaagtgatgcgcatgt, hif-1_4, 4, 80, 45 | |||
gagtcttcagctcacttttc, hif-1_5, 5, 123, 45 | |||
aattcgtagaaactggtgcc, hif-1_6, 6, 148, 45 | |||
catcatatcggctggatgta, hif-1_7, 7, 170, 45 | |||
ggcaaaaagttccttcatgg, hif-1_8, 8, 203, 45 | |||
aatacggggtacggatgtgt, hif-1_9, 9, 228, 50 | |||
tcatttgcagcaatcaaccg, hif-1_10, 10, 250, 45 | |||
tgtttgaatccaggcaagtg, hif-1_11, 11, 272, 45 | |||
cgtcgtatgtgtgattgtag, hif-1_12, 12, 299, 45 | |||
ccgagaacgtaatgaacaca, hif-1_13, 13, 346, 45 | |||
aatgactcttcagctccttg, hif-1_14, 14, 370, 45 | |||
ggcattgaatcagtgcaaac, hif-1_15, 15, 394, 45 | |||
gatatctacttgcattccag, hif-1_16, 16, 416, 40 | |||
ctcttgtatcatccacttcc, hif-1_17, 17, 441, 45 | |||
cgcattccacaatttcaggt, hif-1_18, 18, 477, 45 | |||
ggctcgatcaatggagtaaa, hif-1_19, 19, 502, 45 | |||
ctggctcaataaccgtatca, hif-1_20, 20, 534, 45 | |||
aacaggttcttctccaccaa, hif-1_21, 21, 557, 45 | |||
tcttacgtgctcccatatca, hif-1_22, 22, 585, 45 | |||
tgcaaaacgtcatcgtagct, hif-1_23, 23, 607, 45 | |||
aaattcgacggttcggttgt, hif-1_24, 24, 694, 45 | |||
atgacgaatccatgaagtcc, hif-1_25, 25, 735, 45 | |||
tatgatgtcttcggtcggga, hif-1_26, 26, 763, 50 | |||
ttccctgactttgtgctctt, hif-1_27, 27, 789, 45 | |||
tggaagacgatccagttgtt, hif-1_28, 28, 813, 45 | |||
ttggcactgtgtggcaatgt, hif-1_29, 29, 847, 50 | |||
aagtccacattgtgagatgc, hif-1_30, 30, 887, 45 | |||
tgtccagatttgatactcgg, hif-1_31, 31, 916, 45 | |||
agtatctgatggtgaaaggg, hif-1_32, 32, 1007, 45 | |||
atcattgcttccgatgactg, hif-1_33, 33, 1058, 45 | |||
caaaaggcatagtggagaac, hif-1_34, 34, 1080, 45 | |||
ttcggcaatggcgatagaat, hif-1_35, 35, 1103, 45 | |||
aatgttggcgacgaatcgat, hif-1_36, 36, 1126, 45 | |||
aaagtattggttcgccagag, hif-1_37, 37, 1149, 45 | |||
tcttcccattgaagatcgtc, hif-1_38, 38, 1171, 45 | |||
tgccaagcacgataaatcag, hif-1_39, 39, 1193, 45 | |||
cctcgtccatttgcatcata, hif-1_40, 40, 1233, 45 | |||
aaagagcttgaagctctggt, hif-1_41, 41, 1260, 45 | |||
aggtgtaaagtcaggcaagt, hif-1_42, 42, 1283, 45 | |||
ttctgtcaatgtgcacaggc, hif-1_43, 43, 1329, 50 | |||
aaatctgagggacctgattg, hif-1_44, 44, 1372, 45 | |||
cgtcttgttggaatggttga, hif-1_45, 45, 1416, 45 | |||
tgctgtccttgccaatatgt, hif-1_46, 46, 1438, 45 | |||
aggctgttgttcattttgct, hif-1_47, 47, 1460, 40 | |||
gagcattggaaatggggaat, hif-1_48, 48, 1487, 45 |
Latest revision as of 14:19, 1 March 2010
Progress:
Probes designed: (03-01-2010 - Alexander van Oudenaarden)
Probes coupled:
Probes purified:
Probes tested:
Dyes available:
>F38A6.3c (hif-1 spliced coding region)
atgagcagggactctgaatacctagatagaaaatacacggaaagcccaatgggtgcattcacaactcgtcacacttgcga catgcgcatcactttcgtttcggataagttcaattacatcttgaaaagtgagctgaagactctcatgggcaccagtttct acgaattggtacatccagccgatatgatgatagtatcaaaatccatgaaggaactttttgccaaaggacacatccgtacc ccgtattaccggttgattgctgcaaatgacacacttgcctggattcaaacagaagctactacaatcacacatacgacgaa aggacaaaaaggacaatatgtcatttgtgttcattacgttctcggaatccaaggagctgaagagtcattggtagtttgca ctgattcaatgccagctggaatgcaagtagatatcaagaaggaagtggatgatacaagagactatattggaagacaacct gaaattgtggaatgcgtcgattttactccattgatcgagccagaagatccatttgatacggttattgagccagtcgttgg tggagaagaacctgttaagcaggctgatatgggagcacgtaagaacagctacgatgacgttttgcaatggctttttcgcg accagccaagctctccgccgccggcacgctaccggtcagcggaccgcttcaggacaaccgaaccgtcgaatttcggttcc gctctggcctcgccggacttcatggattcgtcatctcgtacctcccgaccgaagacatcatacggacgaagagcacaaag tcagggaagtcgaacaactggatcgtcttccacgtcagcatcggccacattgccacacagtgccaactactcgccacttg cagagggcatctcacaatgtggacttaacagtcccccgagtatcaaatctggacaagtcgtgtacggagacgctcgatct atgggacgtagctgcgatccgtccgattcgtcacgacgcttttccgccctttcaccatcagatactctcaatgtgtcgtc cactagaggcatcaacccagtcatcggaagcaatgatgtgttctccactatgccttttgccgattctatcgccattgccg aaaggatcgattcgtcgccaacattaacctctggcgaaccaatactttgtgacgatcttcaatgggaagagcctgattta tcgtgcttggcaccattcgttgacacttatgatatgatgcaaatggacgaggggttaccaccagagcttcaagctcttta cgacttgcctgactttacacctgcggtacctcaagccccagctgctcggcctgtgcacattgacagaagcccaccagcga agcgaatgcaccaatcaggtccctcagatttagattttatgtacactcaacattatcaaccattccaacaagacgagaca tattggcaaggacagcaacagcaaaatgaacaacagcctagttcttattccccatttccaatgctctcttga
Name of probe set: hif-1
Probes designed on Mon, 01 Mar 10 14:18:59 -0700
48 probes designed for target of length 1512
Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC
tattcagagtccctgctcat, hif-1_1, 1, 1, 45
gggctttccgtgtattttct, hif-1_2, 2, 28, 45
tgtgacgagttgtgaatgca, hif-1_3, 3, 54, 45
aacgaaagtgatgcgcatgt, hif-1_4, 4, 80, 45
gagtcttcagctcacttttc, hif-1_5, 5, 123, 45
aattcgtagaaactggtgcc, hif-1_6, 6, 148, 45
catcatatcggctggatgta, hif-1_7, 7, 170, 45
ggcaaaaagttccttcatgg, hif-1_8, 8, 203, 45
aatacggggtacggatgtgt, hif-1_9, 9, 228, 50
tcatttgcagcaatcaaccg, hif-1_10, 10, 250, 45
tgtttgaatccaggcaagtg, hif-1_11, 11, 272, 45
cgtcgtatgtgtgattgtag, hif-1_12, 12, 299, 45
ccgagaacgtaatgaacaca, hif-1_13, 13, 346, 45
aatgactcttcagctccttg, hif-1_14, 14, 370, 45
ggcattgaatcagtgcaaac, hif-1_15, 15, 394, 45
gatatctacttgcattccag, hif-1_16, 16, 416, 40
ctcttgtatcatccacttcc, hif-1_17, 17, 441, 45
cgcattccacaatttcaggt, hif-1_18, 18, 477, 45
ggctcgatcaatggagtaaa, hif-1_19, 19, 502, 45
ctggctcaataaccgtatca, hif-1_20, 20, 534, 45
aacaggttcttctccaccaa, hif-1_21, 21, 557, 45
tcttacgtgctcccatatca, hif-1_22, 22, 585, 45
tgcaaaacgtcatcgtagct, hif-1_23, 23, 607, 45
aaattcgacggttcggttgt, hif-1_24, 24, 694, 45
atgacgaatccatgaagtcc, hif-1_25, 25, 735, 45
tatgatgtcttcggtcggga, hif-1_26, 26, 763, 50
ttccctgactttgtgctctt, hif-1_27, 27, 789, 45
tggaagacgatccagttgtt, hif-1_28, 28, 813, 45
ttggcactgtgtggcaatgt, hif-1_29, 29, 847, 50
aagtccacattgtgagatgc, hif-1_30, 30, 887, 45
tgtccagatttgatactcgg, hif-1_31, 31, 916, 45
agtatctgatggtgaaaggg, hif-1_32, 32, 1007, 45
atcattgcttccgatgactg, hif-1_33, 33, 1058, 45
caaaaggcatagtggagaac, hif-1_34, 34, 1080, 45
ttcggcaatggcgatagaat, hif-1_35, 35, 1103, 45
aatgttggcgacgaatcgat, hif-1_36, 36, 1126, 45
aaagtattggttcgccagag, hif-1_37, 37, 1149, 45
tcttcccattgaagatcgtc, hif-1_38, 38, 1171, 45
tgccaagcacgataaatcag, hif-1_39, 39, 1193, 45
cctcgtccatttgcatcata, hif-1_40, 40, 1233, 45
aaagagcttgaagctctggt, hif-1_41, 41, 1260, 45
aggtgtaaagtcaggcaagt, hif-1_42, 42, 1283, 45
ttctgtcaatgtgcacaggc, hif-1_43, 43, 1329, 50
aaatctgagggacctgattg, hif-1_44, 44, 1372, 45
cgtcttgttggaatggttga, hif-1_45, 45, 1416, 45
tgctgtccttgccaatatgt, hif-1_46, 46, 1438, 45
aggctgttgttcattttgct, hif-1_47, 47, 1460, 40
gagcattggaaatggggaat, hif-1_48, 48, 1487, 45