Van Oudenaarden Lab:C16C2.1

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

---

>C16C2.1 (ceh-5 spliced coding region + UTRs)

tcttgattcaact

atgccttctgccgatacagagttcatacgagttattcgcatcaagagtgctaatggttcagagaagatgcttgaaattcc agcaaaacttgatttggagagaccgaagagaccgcgtactgtattcaccgatgagcaattagagaagctagaagaatcat tcaacacttcaggctatctcagtgggtcgactcgagcaaaactagcggaatcccttggtcttagtgacaatcaggtcaaa gtttggtttcaaaatcgaagaaccaagcagaagaaaatcgattctagagatcctataaagccggaaacattgaaacctgc tgaaaactatcaaaacgtctatcagaactatcaaaactattggacagccgctgcatttctatcaaacaatgtcatttcgt cataa

tcatttcgaatttcaaagctacgataaaaggacaaa ggaaactcaccttttactgataatctttccttttttgtcgcctcgattcgggctcgtttgcttttcttcttgatgtctga aaataataaattataaaa

---

Name of probe set: ceh-5

Probes designed on Mon, 01 Mar 10 08:49:11 -0700

25 probes designed for target of length 552 (target too short for 48 probes)

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

gaaggcatagttgaatcaag, ceh-5_1, 1, 2, 40

tcgtatgaactctgtatcgg, ceh-5_2, 2, 24, 45

tagcactcttgatgcgaata, ceh-5_3, 3, 46, 40

tcaagcatcttctctgaacc, ceh-5_4, 4, 68, 45

caaatcaagttttgctggaa, ceh-5_5, 5, 90, 35

tacgcggtctcttcggtctc, ceh-5_6, 6, 112, 60

aattgctcatcggtgaatac, ceh-5_7, 7, 134, 40

gaatgattcttctagcttct, ceh-5_8, 8, 156, 35

cactgagatagcctgaagtg, ceh-5_9, 9, 178, 50

gctagttttgctcgagtcga, ceh-5_10, 10, 200, 50

gtcactaagaccaagggatt, ceh-5_11, 11, 222, 45

gaaaccaaactttgacctga, ceh-5_12, 12, 244, 40

ttctgcttggttcttcgatt, ceh-5_13, 13, 266, 40

aggatctctagaatcgattt, ceh-5_14, 14, 288, 35

gtttcaatgtttccggcttt, ceh-5_15, 15, 310, 40

acgttttgatagttttcagc, ceh-5_16, 16, 332, 35

atagttttgatagttctgat, ceh-5_17, 17, 354, 25

atagaaatgcagcggctgtc, ceh-5_18, 18, 376, 50

tatgacgaaatgacattgtt, ceh-5_19, 19, 398, 30

tagctttgaaattcgaaatg, ceh-5_20, 20, 420, 30

agtttcctttgtccttttat, ceh-5_21, 21, 442, 30

gaaagattatcagtaaaagg, ceh-5_22, 22, 464, 30

ccgaatcgaggcgacaaaaa, ceh-5_23, 23, 486, 50

tcaagaagaaaagcaaacga, ceh-5_24, 24, 508, 35

tataatttattattttcaga, ceh-5_25, 25, 530, 10