Van Oudenaarden Lab:C08C3.1: Difference between revisions
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>C08C3.1a (egl-5 spliced coding region) | |||
aatctacagaataggctccgccttctttcaaattttggaaagcagtgagagtgagggattacggtacacaca | |||
atgaacacttcgacgagtgcattcgattttggctcgtcgacagcttcatcagctgccacgtcgacaacatcttcacaacc | |||
agatgccaatgatcatttatcgagacttgccgccatgacgcaaggagttggaaaagaagatccagaaacatcatcaactc | |||
catccacagaagccagtctttacccaggtatctcggctgcgtacatgcagagctacggctggccacagaactacaactac | |||
tttggtcaaccattgggccctgccacgtttcccggatggcctcagtgctatccgaatacggcgtggcccaactacgcatc | |||
atcaaagaaaggccgtcaaacgtatcaacgctatcaaacatcagttcttgaagcgaaattccaacagtcatcatacgtgt | |||
caaagaaacaacgtgaagagctccgcctgcagactcaattgacagatcgtcaaatcaaaatctggttccaaaatcgtcga | |||
atgaaggcgaaaaaagagaagcaaagagtagatgatcacacggaacatactccacttctaccggcaaatccaccaaaagg | |||
aatgggaatggatatggatgatgagaaaaaatggcaaatggctcattggccaccagcagctgcacacaatccatatcaat | |||
acccgttgtgtccaccgtaa | |||
---- | |||
Name of probe set: egl-5 | |||
Probes designed on Mon, 01 Mar 10 14:15:58 -0700 | |||
33 probes designed for target of length 732 (target too short for 48 probes) | |||
Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC | |||
cggagcctattctgtagatt, egl-5_1, 1, 1, 45 | |||
gctttccaaaatttgaaaga, egl-5_2, 2, 24, 30 | |||
accgtaatccctcactctca, egl-5_3, 3, 46, 50 | |||
cgtcgaagtgttcattgtgt, egl-5_4, 4, 68, 45 | |||
acgagccaaaatcgaatgca, egl-5_5, 5, 90, 45 | |||
gtggcagctgatgaagctgt, egl-5_6, 6, 112, 55 | |||
tggttgtgaagatgttgtcg, egl-5_7, 7, 134, 45 | |||
ctcgataaatgatcattggc, egl-5_8, 8, 157, 40 | |||
tccttgcgtcatggcggcaa, egl-5_9, 9, 179, 60 | |||
gtttctggatcttcttttcc, egl-5_10, 10, 202, 40 | |||
ttctgtggatggagttgatg, egl-5_11, 11, 224, 45 | |||
agatacctgggtaaagactg, egl-5_12, 12, 246, 45 | |||
tagctctgcatgtacgcagc, egl-5_13, 13, 268, 55 | |||
agttgtagttctgtggccag, egl-5_14, 14, 291, 50 | |||
gggcccaatggttgaccaaa, egl-5_15, 15, 313, 55 | |||
aggccatccgggaaacgtgg, egl-5_16, 16, 335, 65 | |||
acgccgtattcggatagcac, egl-5_17, 17, 357, 55 | |||
tttgatgatgcgtagttggg, egl-5_18, 18, 379, 45 | |||
ttgatacgtttgacggcctt, egl-5_19, 19, 401, 45 | |||
caagaactgatgtttgatag, egl-5_20, 20, 423, 35 | |||
gatgactgttggaatttcgc, egl-5_21, 21, 445, 45 | |||
acgttgtttctttgacacgt, egl-5_22, 22, 467, 40 | |||
gagtctgcaggcggagctct, egl-5_23, 23, 489, 65 | |||
ttgatttgacgatctgtcaa, egl-5_24, 24, 511, 35 | |||
tcgacgattttggaaccaga, egl-5_25, 25, 533, 45 | |||
gcttctcttttttcgccttc, egl-5_26, 26, 555, 45 | |||
tccgtgtgatcatctactct, egl-5_27, 27, 577, 45 | |||
tgccggtagaagtggagtat, egl-5_28, 28, 599, 50 | |||
ttcccattccttttggtgga, egl-5_29, 29, 621, 45 | |||
tttttctcatcatccatatc, egl-5_30, 30, 643, 30 | |||
tggccaatgagccatttgcc, egl-5_31, 31, 665, 55 | |||
atggattgtgtgcagctgct, egl-5_32, 32, 687, 50 | |||
ggtggacacaacgggtattg, egl-5_33, 33, 709, 55 |
Latest revision as of 14:16, 1 March 2010
Progress:
Probes designed: (03-01-2010 - Alexander van Oudenaarden)
Probes coupled:
Probes purified:
Probes tested:
Dyes available:
>C08C3.1a (egl-5 spliced coding region)
aatctacagaataggctccgccttctttcaaattttggaaagcagtgagagtgagggattacggtacacaca
atgaacacttcgacgagtgcattcgattttggctcgtcgacagcttcatcagctgccacgtcgacaacatcttcacaacc agatgccaatgatcatttatcgagacttgccgccatgacgcaaggagttggaaaagaagatccagaaacatcatcaactc catccacagaagccagtctttacccaggtatctcggctgcgtacatgcagagctacggctggccacagaactacaactac tttggtcaaccattgggccctgccacgtttcccggatggcctcagtgctatccgaatacggcgtggcccaactacgcatc atcaaagaaaggccgtcaaacgtatcaacgctatcaaacatcagttcttgaagcgaaattccaacagtcatcatacgtgt caaagaaacaacgtgaagagctccgcctgcagactcaattgacagatcgtcaaatcaaaatctggttccaaaatcgtcga atgaaggcgaaaaaagagaagcaaagagtagatgatcacacggaacatactccacttctaccggcaaatccaccaaaagg aatgggaatggatatggatgatgagaaaaaatggcaaatggctcattggccaccagcagctgcacacaatccatatcaat acccgttgtgtccaccgtaa
Name of probe set: egl-5
Probes designed on Mon, 01 Mar 10 14:15:58 -0700
33 probes designed for target of length 732 (target too short for 48 probes)
Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC
cggagcctattctgtagatt, egl-5_1, 1, 1, 45
gctttccaaaatttgaaaga, egl-5_2, 2, 24, 30
accgtaatccctcactctca, egl-5_3, 3, 46, 50
cgtcgaagtgttcattgtgt, egl-5_4, 4, 68, 45
acgagccaaaatcgaatgca, egl-5_5, 5, 90, 45
gtggcagctgatgaagctgt, egl-5_6, 6, 112, 55
tggttgtgaagatgttgtcg, egl-5_7, 7, 134, 45
ctcgataaatgatcattggc, egl-5_8, 8, 157, 40
tccttgcgtcatggcggcaa, egl-5_9, 9, 179, 60
gtttctggatcttcttttcc, egl-5_10, 10, 202, 40
ttctgtggatggagttgatg, egl-5_11, 11, 224, 45
agatacctgggtaaagactg, egl-5_12, 12, 246, 45
tagctctgcatgtacgcagc, egl-5_13, 13, 268, 55
agttgtagttctgtggccag, egl-5_14, 14, 291, 50
gggcccaatggttgaccaaa, egl-5_15, 15, 313, 55
aggccatccgggaaacgtgg, egl-5_16, 16, 335, 65
acgccgtattcggatagcac, egl-5_17, 17, 357, 55
tttgatgatgcgtagttggg, egl-5_18, 18, 379, 45
ttgatacgtttgacggcctt, egl-5_19, 19, 401, 45
caagaactgatgtttgatag, egl-5_20, 20, 423, 35
gatgactgttggaatttcgc, egl-5_21, 21, 445, 45
acgttgtttctttgacacgt, egl-5_22, 22, 467, 40
gagtctgcaggcggagctct, egl-5_23, 23, 489, 65
ttgatttgacgatctgtcaa, egl-5_24, 24, 511, 35
tcgacgattttggaaccaga, egl-5_25, 25, 533, 45
gcttctcttttttcgccttc, egl-5_26, 26, 555, 45
tccgtgtgatcatctactct, egl-5_27, 27, 577, 45
tgccggtagaagtggagtat, egl-5_28, 28, 599, 50
ttcccattccttttggtgga, egl-5_29, 29, 621, 45
tttttctcatcatccatatc, egl-5_30, 30, 643, 30
tggccaatgagccatttgcc, egl-5_31, 31, 665, 55
atggattgtgtgcagctgct, egl-5_32, 32, 687, 50
ggtggacacaacgggtattg, egl-5_33, 33, 709, 55