User:Yun-Peng Xu: Difference between revisions

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==Contact Info==
==Contact Info==
[[GFP.Tif|right|thumb]]
[[Image:Photo_Peng.jpg|right|thumb]]


*Peng Xu
*Peng Xu
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*[[Special:Emailuser/Peng Daniel Xu|pxu999 at gmail dot com]]
*[[Special:Emailuser/Peng Daniel Xu|pxu999 at gmail dot com]]


I work in the [[Koffas Lab]] at [http://www.rpi.edu/ Rensselaer Polytechnic Institute]. Before we moved to RPI at February 2011, I have studied at the [http://www.buffalo.edu/ State University of New York at Buffalo]] for two and a half years. My research interests include creating novel microbial platforms for producing flavonoids and fatty acids through a combination of metabolic engineering and synthetic biology approach.
I work in the [http://koffasresearch.wordpress.com/lab-members/ Koffas group] at [http://www.rpi.edu/ Rensselaer Polytechnic Institute]. Before we moved to RPI at February 2011, I have studied at the [http://www.buffalo.edu/ State University of New York at Buffalo] for two and a half years. My PhD projects involve developing synthetic biology tools to engineer the microbial synthesis of natural products and fuel molecules in ''E. coli''.


==Education==
==Education==
<!--Include info about your educational background-->
<!--Include info about your educational background-->
* December 2012 (expected),PhD in Metabolic Engineering,[http://www.rpi.edu/ Rensselaer Polytechnic Institute]
* May, 2013 (expected),PhD in Chemical Engineering, [http://www.rpi.edu/ Rensselaer Polytechnic Institute]
* 2006, MS in Biochemical Engineering, [http://www.jiangnan.edu.cn/ Jiangnan University] (Formerly Southern Yangtze University)
* 2006, MS in Biochemical Engineering, [http://www.jiangnan.edu.cn/ Jiangnan University] (Formerly Southern Yangtze University)
* 2003, BS in Biotechnology, [http://www.jiangnan.edu.cn/ Jiangnan University] (Formerly Southern Yangtze University)
* 2003, BS in Biotechnology, [http://www.jiangnan.edu.cn/ Jiangnan University] (Formerly Southern Yangtze University)
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[http://www.researcherid.com/rid/C-6440-2011 My research ID profile]
[http://www.researcherid.com/rid/C-6440-2011 My research ID profile]
# Xu, P; Ding, ZY; Qian, Z; et al. [http://www.sciencedirect.com/science/article/pii/S0141022907003407 Improved production of mycelial biomass and ganoderic acid by submerged culture of Ganoderma lucidum SB97 using complex media],  Enzyme and Microbial Technology Volume: 42 Issue: 4 Pages: 325-331  
# Xu P, Gu Q; Wang W, Wong L, Bower A, Collins CH and Koffas MA. (2013) [http://dx.doi.org/10.1038/ncomms2425 Modular optimization of multi-gene pathway for fatty acids production in ''E. coli'']. Nature Communications, 4: 1409.
# Zhang, TX; Xu, P; Sun, J; et al. [http://apps.isiknowledge.com/InboundService.do?product=WOS&action=retrieve&SrcApp=RID&UT=000263481500005&SID=3CjOGJ5LO3kk6iLg4d1&Init=Yes&SrcAuth=RID&mode=FullRecord&customersID=RID&DestFail=http%3A%2F%2Faccess.isiproducts.com%2Fcustom_images%2Fwok_failed_auth.html Identification of Biological Wort Turbidity Caused by Microbial Contamination of Gairdner Barley], Journal of the American Society of Brewing Chemists Volume: 67 Issue: 1 Pages: 33-37  
# Bhan N, Xu P and Koffas MA. (2013) [http://dx.doi.org/10.1016/j.copbio.2013.02.019 Pathway and protein engineering approaches to produce novel and commodity small molecules]. Current Opinion in Biotechnology, Accepted.
# Xu, Peng; Koffas, Mattheos A. G. [http://www.future-science.com/doi/abs/10.4155/bfs.10.13 Metabolic engineering of Escherichia coli for biofuel production], Biofuels Volume: 1 Issue: 3 Pages: 493-504
# Bhan N, Xu P, Khalidi O and Koffas MAG. (2013) [http://dx.doi.org/10.1016/j.ces.2012.10.009 Redirecting carbon flux into Malonyl-CoA to improve Resveratrol titers: Proof of concept for genetic interventions predicted by OptForce computational framework]. Chemical Engineering Science, Accepted manuscript, In press
# Xu P and Koffas MA. (2013) Assembly of multi-gene pathways and combinatorial pathway libraries through ePathBrick vectors. Book chapter in Methods in Molecular Biology: Synthetic Biology.
# Xu, Peng; Bhan, Namita; Koffas, Mattheos A.G. (2013) [http://dx.doi.org/10.1016/j.copbio.2012.08.010 Engineering plant metabolism into microbes: from systems biology to synthetic biology]. Current Opinion in Biotechnology, 24(2), pp 291-299. [http://koffasresearch.files.wordpress.com/2012/09/2012-08-010.pdf PDF]
# Xu, Peng; Vansiri, Amerin; Bhan, Namita; Koffas, Mattheos A.G. (2012) [http://dx.doi.org/doi:10.1021/sb300016b ePathBrick: A synthetic biology platform for engineering metabolic pathways in E. coli]. ACS Synthetic Biology,1 (7), pp 256–266.[http://koffasresearch.files.wordpress.com/2012/07/epathbrick.pdf PDF]
# Xu, Peng; Ranganathan, Sridhar; Fowler, Zachary; Maranas, Costas D.; Koffas, Mattheos A.G. (2011) [http://dx.doi.org/doi:10.1016/j.ymben.2011.06.008 Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA]. Metabolic Engineering, Volume: 13 Issue: 5 Pages: 578-587. [http://koffasresearch.files.wordpress.com/2012/07/malonyl-coa.pdf PDF]
# Xu, Peng; Koffas, Mattheos A. G. (2010) [http://dx.doi.org/doi:10.4155/bfs.10.13 Metabolic engineering of Escherichia coli for biofuel production], Biofuels, Volume: 1 Issue: 3 Pages: 493-504. [http://koffasresearch.files.wordpress.com/2012/07/biofuels.pdf PDF]
# Zhang, Liang; Ding, Zhongyang; Xu, Peng; et al. (2011) [http://dx.doi.org/doi:10.1007/s12257-010-0345-z Methyl lucidenate F isolated from the ethanol-soluble-acidic components of Ganoderma lucidum is a novel tyrosinase inhibitor],Biotechnology and Bioprocess Engineering, Volume: 16 Issue: 3 Pages: 457-461. [https://docs.google.com/open?id=0B4wZIrGHL-wBZTU5YTQ1NDQtMzBlMy00NmRjLThlNjktMTdiNzY2OTY4YzM2 PDF] 
# Xu, Peng; Ding, ZY; Qian, Z; et al. (2008) [http://dx.doi.org/doi:10.1016/j.enzmictec.2007.10.016 Improved production of mycelial biomass and ganoderic acid by submerged culture of Ganoderma lucidum SB97 using complex media],  Enzyme and Microbial Technology, Volume: 42 Issue: 4 Pages: 325-331. [https://docs.google.com/viewer?a=v&pid=explorer&chrome=true&srcid=0B4wZIrGHL-wBNmZhZTI1MDYtNzRkNS00ODczLTkwNTktZjM0ZmQxMmFhODE2&hl=en_US PDF]
# Zhang, TX; Xu, P; Sun, J; et al. (2009) [http://dx.doi.org/doi:10.1094/ASBCJ-2008-1212-01 Identification of Biological Wort Turbidity Caused by Microbial Contamination of Gairdner Barley], Journal of the American Society of Brewing Chemists, Volume: 67 Issue: 1 Pages: 33-37


==Useful links==
==Useful links==
*[[OpenWetWare:Welcome|Introductory tutorial]]
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*[[Help|OpenWetWare help pages]]
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Revision as of 14:12, 16 March 2013

Contact Info

I work in the Koffas group at Rensselaer Polytechnic Institute. Before we moved to RPI at February 2011, I have studied at the State University of New York at Buffalo for two and a half years. My PhD projects involve developing synthetic biology tools to engineer the microbial synthesis of natural products and fuel molecules in E. coli.

Education

Research interests

  1. Metabolic engineering
  2. Synthetic biology
  3. Natural Products/Biofuels
  4. Biochemical/Bioprocess engineering

Publications

My research ID profile

  1. Xu P, Gu Q; Wang W, Wong L, Bower A, Collins CH and Koffas MA. (2013) Modular optimization of multi-gene pathway for fatty acids production in E. coli. Nature Communications, 4: 1409.
  2. Bhan N, Xu P and Koffas MA. (2013) Pathway and protein engineering approaches to produce novel and commodity small molecules. Current Opinion in Biotechnology, Accepted.
  3. Bhan N, Xu P, Khalidi O and Koffas MAG. (2013) Redirecting carbon flux into Malonyl-CoA to improve Resveratrol titers: Proof of concept for genetic interventions predicted by OptForce computational framework. Chemical Engineering Science, Accepted manuscript, In press
  4. Xu P and Koffas MA. (2013) Assembly of multi-gene pathways and combinatorial pathway libraries through ePathBrick vectors. Book chapter in Methods in Molecular Biology: Synthetic Biology.
  5. Xu, Peng; Bhan, Namita; Koffas, Mattheos A.G. (2013) Engineering plant metabolism into microbes: from systems biology to synthetic biology. Current Opinion in Biotechnology, 24(2), pp 291-299. PDF
  6. Xu, Peng; Vansiri, Amerin; Bhan, Namita; Koffas, Mattheos A.G. (2012) ePathBrick: A synthetic biology platform for engineering metabolic pathways in E. coli. ACS Synthetic Biology,1 (7), pp 256–266.PDF
  7. Xu, Peng; Ranganathan, Sridhar; Fowler, Zachary; Maranas, Costas D.; Koffas, Mattheos A.G. (2011) Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA. Metabolic Engineering, Volume: 13 Issue: 5 Pages: 578-587. PDF
  8. Xu, Peng; Koffas, Mattheos A. G. (2010) Metabolic engineering of Escherichia coli for biofuel production, Biofuels, Volume: 1 Issue: 3 Pages: 493-504. PDF
  9. Zhang, Liang; Ding, Zhongyang; Xu, Peng; et al. (2011) Methyl lucidenate F isolated from the ethanol-soluble-acidic components of Ganoderma lucidum is a novel tyrosinase inhibitor,Biotechnology and Bioprocess Engineering, Volume: 16 Issue: 3 Pages: 457-461. PDF
  10. Xu, Peng; Ding, ZY; Qian, Z; et al. (2008) Improved production of mycelial biomass and ganoderic acid by submerged culture of Ganoderma lucidum SB97 using complex media, Enzyme and Microbial Technology, Volume: 42 Issue: 4 Pages: 325-331. PDF
  11. Zhang, TX; Xu, P; Sun, J; et al. (2009) Identification of Biological Wort Turbidity Caused by Microbial Contamination of Gairdner Barley, Journal of the American Society of Brewing Chemists, Volume: 67 Issue: 1 Pages: 33-37

Useful links

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